SMTL ID : 6ujx.1

HIV-1 wild-type reverse transcriptase-DNA complex with (-)-FTC-TP

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.70 Å

Oligo State

hetero-1-1-mer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: G.448, A.449, N.472, R.473 Chain B: A.288 5 PLIP interactions: 5 interactions with chain A Hydrogen bonds: A:G.448, A:N.472 Water bridges: A:T.451, A:T.451 Salt bridges: A:R.473 SO4.2: 1 residues within 4Å: Chain A: Q.352 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Q.352 SO4.5: 4 residues within 4Å: Chain C: G.15, G.16 Chain D: G.10, C.11 No protein-ligand interaction detected (PLIP) SO4.6: 1 residues within 4Å: Chain D: G.6 No protein-ligand interaction detected (PLIP)

1 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: D.122, V.123, D.197 Ligands: 1RY.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.122, A:V.123, A:D.197

1 x 1RY: [[(2R,5S)-5-(4-azanyl-5-fluoranyl-2-oxidanylidene-pyrimidin-1-yl)-1,3-oxathiolan-2-yl]methoxy-oxidanyl-phosphoryl] phosphono hydrogen phosphate(Non-covalent)

1RY.4: 15 residues within 4Å: Chain A: K.77, R.84, D.122, V.123, G.124, D.125, A.126, Y.127, Q.163, D.197, K.232 Chain C: C.21 Chain D: G.5, G.6 Ligands: MG.3 11 PLIP interactions: 11 interactions with chain A Hydrogen bonds: A:R.84, A:V.123, A:D.125, A:A.126 Salt bridges: A:K.77, A:K.77, A:K.77, A:R.84, A:K.232, A:K.232 pi-Cation interactions: A:R.84

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hung, M. et al., Elucidating molecular interactions ofL-nucleotides with HIV-1 reverse transcriptase and mechanism of M184V-caused drug resistance. Commun Biol (2019)

Release Date

2019-12-25

Peptides

p66 Reverse transcriptase/RNaseH: A
p51 Reverse transcriptase/RNaseH: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

p66 Reverse transcriptase/RNaseH

p51 Reverse transcriptase/RNaseH

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