SMTL ID : 6uko.1

Structure analysis of full-length mouse bcs1 complex

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 4.40 Å

Oligo State

homo-heptamer

Ligands

7 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 22 residues within 4Å: Chain A: R.186, S.190, V.191, V.192, L.193, P.232, G.233, C.234, G.235, K.236, S.237, S.238, N.332, Q.360, M.364, P.393, A.394, Q.397 Chain B: G.219, P.221, V.319 Ligands: MG.2 18 PLIP interactions: 17 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:R.186, A:R.186, A:V.192, A:G.233, A:C.234, A:C.234, A:G.235, A:K.236, A:S.237, A:S.237, A:S.238, A:S.238, A:N.332, A:Q.360, A:Q.397, A:Q.397, B:G.219 Salt bridges: A:K.236 ADP.3: 19 residues within 4Å: Chain B: R.186, S.190, V.191, V.192, L.193, P.232, G.233, C.234, G.235, K.236, S.237, S.238, N.332, P.393, Q.397 Chain C: G.219, P.221, V.319 Ligands: MG.4 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:R.186, B:R.186, B:V.192, B:G.233, B:C.234, B:C.234, B:G.235, B:K.236, B:S.237, B:S.237, B:S.238, B:S.238, B:N.332, B:Q.397, B:Q.397 Salt bridges: B:K.236 ADP.5: 23 residues within 4Å: Chain C: R.186, S.190, V.191, V.192, L.193, P.232, G.233, C.234, G.235, K.236, S.237, S.238, N.332, Q.360, M.364, F.368, P.393, A.394, Q.397 Chain D: G.219, P.221, V.319 Ligands: MG.6 13 PLIP interactions: 13 interactions with chain C Hydrogen bonds: C:R.186, C:R.186, C:V.192, C:G.233, C:C.234, C:C.234, C:G.235, C:K.236, C:S.237, C:S.238, C:S.238, C:Q.397 Salt bridges: C:K.236 ADP.7: 22 residues within 4Å: Chain D: R.186, S.190, V.191, V.192, L.193, P.232, G.233, C.234, G.235, K.236, S.237, S.238, N.332, Q.360, M.364, P.393, A.394, Q.397 Chain E: G.219, P.221, V.319 Ligands: MG.8 17 PLIP interactions: 16 interactions with chain D, 1 interactions with chain E Hydrogen bonds: D:R.186, D:R.186, D:V.192, D:G.233, D:C.234, D:C.234, D:G.235, D:K.236, D:S.237, D:S.237, D:S.238, D:S.238, D:N.332, D:Q.397, D:Q.397, E:G.219 Salt bridges: D:K.236 ADP.9: 22 residues within 4Å: Chain E: R.186, S.190, V.191, V.192, L.193, P.232, G.233, C.234, G.235, K.236, S.237, S.238, N.332, Q.360, M.364, P.393, A.394, Q.397 Chain F: G.219, P.221, V.319 Ligands: MG.10 17 PLIP interactions: 17 interactions with chain E Hydrogen bonds: E:R.186, E:R.186, E:V.192, E:G.233, E:C.234, E:C.234, E:G.235, E:K.236, E:S.237, E:S.237, E:S.237, E:S.238, E:S.238, E:N.332, E:Q.397, E:Q.397 Salt bridges: E:K.236 ADP.11: 20 residues within 4Å: Chain F: R.186, S.190, V.191, V.192, L.193, P.232, G.233, C.234, G.235, K.236, S.237, S.238, N.332, Q.360, P.393, A.394, Q.397 Chain G: G.219, P.221 Ligands: MG.12 17 PLIP interactions: 16 interactions with chain F, 1 interactions with chain G Hydrogen bonds: F:R.186, F:R.186, F:V.192, F:G.233, F:C.234, F:C.234, F:G.235, F:K.236, F:S.237, F:S.237, F:S.238, F:S.238, F:Q.360, F:Q.397, F:Q.397, G:G.219 Salt bridges: F:K.236 ADP.13: 21 residues within 4Å: Chain A: G.219, I.220, P.221, V.319 Chain G: R.186, S.190, V.191, V.192, L.193, P.232, G.233, C.234, G.235, K.236, S.237, S.238, N.332, M.364, P.393, Q.397 Ligands: MG.14 15 PLIP interactions: 14 interactions with chain G, 1 interactions with chain A Hydrogen bonds: G:R.186, G:R.186, G:V.192, G:G.233, G:C.234, G:C.234, G:G.235, G:K.236, G:S.237, G:S.238, G:S.238, G:Q.397, G:Q.397, A:G.219 Salt bridges: G:K.236

7 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 6 residues within 4Å: Chain A: K.236, S.237, E.282, D.283, N.332 Ligands: ADP.1 No protein-ligand interaction detected (PLIP) MG.4: 5 residues within 4Å: Chain B: S.237, E.282, D.283, N.332 Ligands: ADP.3 No protein-ligand interaction detected (PLIP) MG.6: 5 residues within 4Å: Chain C: K.236, E.282, D.283, N.332 Ligands: ADP.5 No protein-ligand interaction detected (PLIP) MG.8: 5 residues within 4Å: Chain D: S.237, E.282, D.283, N.332 Ligands: ADP.7 No protein-ligand interaction detected (PLIP) MG.10: 6 residues within 4Å: Chain E: K.236, S.237, E.282, D.283, N.332 Ligands: ADP.9 No protein-ligand interaction detected (PLIP) MG.12: 5 residues within 4Å: Chain F: S.237, E.282, D.283, N.332 Ligands: ADP.11 No protein-ligand interaction detected (PLIP) MG.14: 5 residues within 4Å: Chain G: S.237, E.282, D.283, N.332 Ligands: ADP.13 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tang, W.K. et al., Structures of AAA protein translocase Bcs1 suggest translocation mechanism of a folded protein. Nat.Struct.Mol.Biol. (2020)

Release Date

2020-02-12

Peptides

Mitochondrial chaperone BCS1: ABCDEFG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

G
G

Mitochondrial chaperone BCS1