SMTL ID : 6ulm.1 (2 other biounits)

Crystal structure of human cadherin 17 EC1-2

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-dimer

Ligands

6 x CA: CALCIUM ION(Non-covalent)

CA.1: 8 residues within 4Å: Chain A: E.19, E.66, D.97, I.98, D.100, N.101, D.133 Ligands: CA.2 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:E.19, A:D.97, A:I.98, A:D.100, A:D.133 CA.2: 5 residues within 4Å: Chain A: E.19, D.64, E.66, D.100 Ligands: CA.1 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:E.19, A:D.64, A:E.66, A:D.100, H2O.4, H2O.4 CA.3: 6 residues within 4Å: Chain A: N.99, N.101, D.131, D.133, N.139, D.194 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:N.101, A:D.131, A:D.133, A:N.139, A:D.194 CA.4: 5 residues within 4Å: Chain B: E.19, D.64, E.66, D.100 Ligands: CA.5 5 PLIP interactions: 4 interactions with chain B, 1 Ligand-Water interactions Metal complexes: B:E.19, B:D.64, B:E.66, B:D.100, H2O.8 CA.5: 8 residues within 4Å: Chain B: E.19, E.66, D.97, I.98, D.100, N.101, D.133 Ligands: CA.4 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:E.19, B:D.97, B:I.98, B:D.100, B:D.133 CA.6: 6 residues within 4Å: Chain B: N.99, N.101, D.131, D.133, N.139, D.194 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:N.101, B:D.131, B:D.133, B:N.139, B:D.194

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Gray, M.E. et al., Crystal structure of the nonclassical cadherin-17 N-terminus and implications for its adhesive binding mechanism. Acta Crystallogr.,Sect.F (2021)

Release Date

2021-03-17

Peptides

Cadherin-17: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Cadherin-17

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