SMTL ID : 6ulv.2 (1 other biounit)

BRD4-BD1 in complex with the cyclic peptide 4.2_1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-2-1-mer

Ligands

3 x IOD: IODIDE ION(Non-functional Binders)

IOD.1: 1 residues within 4Å: Chain A: Y.30 Ligand excluded by PLIP IOD.2: 1 residues within 4Å: Chain B: N.81 Ligand excluded by PLIP IOD.3: 4 residues within 4Å: Chain A: K.56 Chain C: X.1, W.2, K.3 Ligand excluded by PLIP

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 5 residues within 4Å: Chain B: Q.50, D.53 Chain C: K.3, N.4, L.8 3 PLIP interactions: 2 interactions with chain B, 1 interactions with chain C Hydrogen bonds: B:Q.50, B:D.53, C:N.4

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Patel, K. et al., Cyclic peptides can engage a single binding pocket through highly divergent modes. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2020-12-02

Peptides

Bromodomain-containing protein 4: AB
Cyclic peptide 4.2_3: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
D

C
G

Bromodomain-containing protein 4

Cyclic peptide 4.2_3

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