SMTL ID : 6unp.1 (1 other biounit)

Crystal structure of the kinase domain of BMPR2-D485G

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

monomer

Ligands

2 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 20 residues within 4Å: Chain A: I.43, G.44, R.45, G.46, R.47, Y.48, G.49, V.51, A.62, K.64, M.113, E.114, Y.116, S.120, R.171, N.172, L.174, D.185 Ligands: MG.3, MG.9 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:G.46, A:R.47, A:Y.48, A:G.49, A:E.114, A:Y.116, A:S.120 Water bridges: A:R.45, A:R.171, A:N.172 Salt bridges: A:K.64, A:K.64 ADP.2: 4 residues within 4Å: Chain A: G.194, N.195, R.196, L.197 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:R.196, A:L.197

7 x MG: MAGNESIUM ION(Non-covalent)

MG.3: 4 residues within 4Å: Chain A: N.172, D.185 Ligands: ADP.1, MG.9 3 PLIP interactions: 1 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.185, H2O.1, H2O.1 MG.4: 5 residues within 4Å: Chain A: W.132, C.136, M.335, L.338, M.339 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:C.136 MG.5: 2 residues within 4Å: Chain A: I.80, R.191 No protein-ligand interaction detected (PLIP) MG.6: 7 residues within 4Å: Chain A: R.215, Y.216, M.217, Y.241, F.270, M.283, V.287 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:R.215, A:M.217, A:Y.241 MG.7: 2 residues within 4Å: Chain A: C.330, E.333 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:E.333 MG.8: 4 residues within 4Å: Chain A: A.69, N.70, R.71, Q.72 1 PLIP interactions: 1 interactions with chain A Metal complexes: A:A.69 MG.9: 5 residues within 4Å: Chain A: G.46, R.47 Ligands: ADP.1, MG.3, SO4.11 No protein-ligand interaction detected (PLIP)

3 x SO4: SULFATE ION(Non-functional Binders)

SO4.10: 5 residues within 4Å: Chain A: R.171, R.215, N.276, H.277, P.278 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:H.277 Salt bridges: A:R.171, A:R.215, A:H.277 SO4.11: 5 residues within 4Å: Chain A: R.45, G.46, R.47, R.171 Ligands: MG.9 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:R.47, A:R.47 Salt bridges: A:R.171 SO4.12: 1 residues within 4Å: Chain A: R.196 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:R.196

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.13: 1 residues within 4Å: Chain A: K.53 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:K.53, A:K.53

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Agnew, C. et al., Structural basis for ALK2/BMPR2 receptor complex signaling through kinase domain oligomerization. Nat Commun (2021)

Release Date

2021-07-07

Peptides

Bone morphogenetic protein receptor type-2: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Bone morphogenetic protein receptor type-2

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