SMTL ID : 6uo6.1 (1 other biounit)

Crystal Structure of the R422Q missense variant of human PGM1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

monomer

Ligands

1 x MG: MAGNESIUM ION(Non-covalent)

MG.1: 4 residues within 4Å: Chain A: S.140, D.311, D.313, D.315 6 PLIP interactions: 4 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:S.140, A:D.311, A:D.313, A:D.315, H2O.3, H2O.11

6 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 4 residues within 4Å: Chain A: R.240, R.244, P.267, N.269 4 PLIP interactions: 4 interactions with chain A Water bridges: A:R.240, A:R.244 Salt bridges: A:R.240, A:R.244 SO4.3: 3 residues within 4Å: Chain A: E.377, K.493, R.514 4 PLIP interactions: 4 interactions with chain A Water bridges: A:E.377, A:R.514 Salt bridges: A:K.493, A:R.514 SO4.4: 3 residues within 4Å: Chain A: R.526, S.528, R.538 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:S.528 Salt bridges: A:R.526, A:R.538 SO4.5: 2 residues within 4Å: Chain A: K.322, H.323 4 PLIP interactions: 4 interactions with chain A Water bridges: A:K.322, A:K.322 Salt bridges: A:K.322, A:H.323 SO4.6: 6 residues within 4Å: Chain A: F.325, F.326, N.328, W.440, Q.445, P.555 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:F.326, A:N.328, A:Q.445 Water bridges: A:F.326, A:F.326, A:D.331, A:D.331, A:W.440 SO4.7: 3 residues within 4Å: Chain A: R.46, H.141, N.142 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:N.142 Salt bridges: A:R.46, A:H.141

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Stiers, K.M. et al., A missense variant remote from the active site impairs stability of human phosphoglucomutase 1. J. Inherit. Metab. Dis. (2020)

Release Date

2020-03-04

Peptides

Phosphoglucomutase-1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Phosphoglucomutase-1

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