SMTL ID : 6uo9.1

Human metabotropic GABA(B) receptor bound to agonist SKF97541 in its intermediate state 2

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-mer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 1 residues within 4Å: Chain A: N.246 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 1 residues within 4Å: Chain A: N.351 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 4 residues within 4Å: Chain A: D.41, N.319, K.320, S.322 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 2 residues within 4Å: Chain B: N.361, N.364 No protein-ligand interaction detected (PLIP)

1 x NAG- NAG- BMA: beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA.4: 2 residues within 4Å: Chain A: R.273, N.277 No protein-ligand interaction detected (PLIP)

1 x QD7: (R)-(3-aminopropyl)methylphosphinic acid(Non-covalent)

QD7.6: 7 residues within 4Å: Chain A: W.19, S.84, G.105, S.106, S.107, W.232, E.303 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.19, A:S.84, A:S.84, A:S.107

2 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 2 residues within 4Å: Chain B: N.258, L.263 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:L.263 NAG.8: 1 residues within 4Å: Chain B: N.413 1 PLIP interactions: 1 interactions with chain B Hydrophobic interactions: B:N.413

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shaye, H. et al., Structural basis of the activation of a metabotropic GABA receptor. Nature (2020)

Release Date

2020-06-10

Peptides

Gamma-aminobutyric acid type B receptor subunit 1: A
Gamma-aminobutyric acid type B receptor subunit 2: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Gamma-aminobutyric acid type B receptor subunit 1

Gamma-aminobutyric acid type B receptor subunit 2

Related Entries With Identical Sequence