SMTL ID : 6uoe.1

3-25 Fab germline-reversion variant bound to an HCMV gB-derived peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x TRS: 2-AMINO-2-HYDROXYMETHYL-PROPANE-1,3-DIOL(Non-functional Binders)

TRS.1: 1 residues within 4Å: Chain B: E.1 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:E.1

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 7 residues within 4Å: Chain A: G.42, K.43 Chain B: A.9, Y.87, G.101, G.102, K.104 5 PLIP interactions: 3 interactions with chain A, 2 interactions with chain B Water bridges: A:Q.39, A:K.43, A:K.43, B:Y.87 Hydrogen bonds: B:Y.87

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ye, X. et al., Recognition of a highly conserved glycoprotein B epitope by a bivalent antibody neutralizing HCMV at a post-attachment step. Plos Pathog. (2020)

Release Date

2020-07-29

Peptides

3-25 Fab heavy chain: A
3-25 Fab light chain: B
Envelope glycoprotein B: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
P

3-25 Fab heavy chain

3-25 Fab light chain

Envelope glycoprotein B

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