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SMTL ID : 6uq9.1
Crystal structure of R421A variant of cytosolic fumarate hydratase from Leishmania major in a complex with S-malate
Coordinates
PDB Format
Compare
Method
X-RAY DIFFRACTION 2.30 Å
Oligo State
homo-dimer
Ligands
2 x
LMR
:
(2S)-2-hydroxybutanedioic acid
(Non-covalent)
LMR.1:
12 residues within 4Å:
Chain A:
Q.170
,
D.171
,
R.209
,
G.251
,
G.252
,
T.503
,
T.504
,
R.507
,
K.527
Chain B:
H.370
,
A.372
Ligands:
SF4.2
16
PLIP interactions
:
15 interactions with chain A
,
1 interactions with chain B
Hydrophobic interactions:
A:D.171
Hydrogen bonds:
A:Q.170
,
A:D.171
,
A:G.251
,
A:G.252
,
A:T.503
,
A:T.504
,
A:T.504
Water bridges:
A:G.487
,
A:P.502
,
A:R.507
,
A:R.507
Salt bridges:
A:R.209
,
A:R.507
,
A:K.527
,
B:H.370
LMR.3:
12 residues within 4Å:
Chain A:
H.370
,
A.372
Chain B:
Q.170
,
D.171
,
R.209
,
G.251
,
G.252
,
T.503
,
T.504
,
R.507
,
K.527
Ligands:
SF4.4
17
PLIP interactions
:
1 interactions with chain A
,
16 interactions with chain B
Salt bridges:
A:H.370
,
B:R.209
,
B:R.507
,
B:K.527
Hydrophobic interactions:
B:D.171
Hydrogen bonds:
B:Q.170
,
B:D.171
,
B:G.251
,
B:G.252
,
B:T.503
,
B:T.503
,
B:T.504
,
B:T.504
Water bridges:
B:G.487
,
B:P.502
,
B:R.507
,
B:R.507
2 x
SF4
:
IRON/SULFUR CLUSTER
(Non-covalent)
SF4.2:
13 residues within 4Å:
Chain A:
C.169
,
Q.170
,
D.171
,
G.250
,
G.252
,
S.253
,
A.287
,
C.288
,
C.382
,
A.384
,
P.502
,
K.527
Ligands:
LMR.1
4
PLIP interactions
:
4 interactions with chain A
,
Salt bridges:
A:D.171
Metal complexes:
A:C.169
,
A:C.288
,
A:C.382
SF4.4:
13 residues within 4Å:
Chain B:
C.169
,
Q.170
,
D.171
,
G.250
,
G.252
,
S.253
,
A.287
,
C.288
,
C.382
,
A.384
,
P.502
,
K.527
Ligands:
LMR.3
4
PLIP interactions
:
4 interactions with chain B
,
Salt bridges:
B:D.171
Metal complexes:
B:C.169
,
B:C.288
,
B:C.382
1 x
GOL
:
GLYCEROL
(Non-functional Binders)
GOL.5:
8 residues within 4Å:
Chain A:
T.263
,
A.265
Chain B:
G.506
,
R.507
,
M.508
,
D.509
,
S.510
,
Q.533
5
PLIP interactions
:
5 interactions with chain B
Hydrogen bonds:
B:S.510
,
B:S.510
,
B:Q.533
Water bridges:
B:S.531
,
B:S.531
Links
RCSB
PDBe
PDBe-KB
PDBj
PDBsum
CATH
PLIP
Citation
Feliciano, P.R. et al., Structural and Biochemical Investigations of the [4Fe-4S] Cluster-Containing Fumarate Hydratase fromLeishmania major. Biochemistry (2019)
Release Date
2019-12-04
Peptides
Fumarate hydratase 2:
A
B
SMTL:PDB
SMTL Chain Id:
PDB Chain Id:
A
A
B
B
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Fumarate hydratase 2
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6uq8.1
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