SMTL ID : 6ur4.1

DNA polymerase I Large Fragment from Bacillus stearothermophilus with DNA template and 3'-amino primer

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.25 Å

Oligo State

monomer

Ligands

1 x DG- DC- DG- DA- DT- DC- DA- DG- C42: DNA (5'-D(*GP*CP*GP*AP*TP*CP*AP*GP*(C42))-3')(Non-covalent)

DG-DC-DG-DA-DT-DC-DA-DG-C42.1: 28 residues within 4Å: Chain A: S.258, T.259, S.260, A.261, R.281, Q.282, K.285, Y.290, R.318, Q.327, N.328, I.329, P.330, I.331, R.332, V.531, H.532, D.533 Chain B: G.2, C.3, T.4, G.5, A.6, T.7, C.8, G.9, C.10, A.11 28 PLIP interactions: 28 interactions with chain A Hydrogen bonds: A:R.318, A:R.318, A:D.533, A:N.230, A:S.233, A:Q.236, A:K.285, A:K.285, A:S.288, A:Q.315, A:R.318, A:R.318, A:S.320, A:E.323, A:N.325, A:N.328, A:A.410, A:G.414, A:Q.500 Salt bridges: A:R.332, A:E.361, A:R.474, A:R.492 Hydrophobic interactions: A:Y.417, A:Y.417 Water bridges: A:Q.315, A:E.361, A:E.361, A:E.361, A:R.474, A:R.474 pi-Stacking: A:Y.417

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lelyveld, V.S. et al., Synthesis of phosphoramidate-linked DNA by a modified DNA polymerase. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2020-03-18

Peptides

DNA polymerase I: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

DNA polymerase I

Related Entries With Identical Sequence