SMTL ID : 6ur7.1

Crystal structure of Sel1 repeat protein from Oxalobacter formigenes

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.71 Å

Oligo State

homo-dimer

Ligands

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: K.16, K.17, Y.18, E.19, Q.20 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:K.17, A:Y.18, A:E.19, A:Q.20 SO4.5: 4 residues within 4Å: Chain B: K.17, Y.18, E.19, Q.20 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.17, B:Y.18, B:E.19, B:Q.20

1 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 4 residues within 4Å: Chain A: A.65, E.66 Chain B: E.66, Q.67 No protein-ligand interaction detected (PLIP)

1 x PG4: TETRAETHYLENE GLYCOL(Non-functional Binders)

PG4.3: 10 residues within 4Å: Chain A: Y.114, V.117, E.118, Y.126, Y.133, D.147, L.150, F.151, Q.154, N.156 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:E.118

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.4: 4 residues within 4Å: Chain A: Y.126, K.127, G.155, G.157 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:G.155, A:G.157 GOL.7: 3 residues within 4Å: Chain B: Y.13, Y.18, Y.42 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:Y.13, B:Y.42

1 x PGE: TRIETHYLENE GLYCOL(Non-functional Binders)

PGE.6: 4 residues within 4Å: Chain B: Y.13, Y.42, K.71, N.75 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.75

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Chang, C. et al., Crystal structure of Sel1 repeat protein from Oxalobacter formigenes. To Be Published

Release Date

2020-10-28

Peptides

Sel1 repeat family protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Sel1 repeat family protein