SMTL ID : 6urt.1

Extended Sensor Paddles with Bound Lipids Revealed in Mechanosensitive Channel YnaI

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-heptamer

Ligands

7 x QGD: O-{(R)-hydroxy[(2R)-3-(icosyloxy)-2-(tetradecanoyloxy)propoxy]phosphoryl}-L-serine(Non-covalent)

QGD.1: 4 residues within 4Å: Chain A: R.120, K.123 Chain G: F.40, Q.105 3 PLIP interactions: 1 interactions with chain G, 2 interactions with chain A Hydrogen bonds: G:F.40, A:R.120 Salt bridges: A:R.120 QGD.2: 4 residues within 4Å: Chain A: F.40, Q.105 Chain B: R.120, K.123 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Hydrogen bonds: A:F.40, B:R.120 Salt bridges: B:R.120 QGD.3: 4 residues within 4Å: Chain B: F.40, Q.105 Chain C: R.120, K.123 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain B Hydrogen bonds: C:R.120, B:F.40 Salt bridges: C:R.120 QGD.4: 4 residues within 4Å: Chain C: F.40, Q.105 Chain D: R.120, K.123 3 PLIP interactions: 1 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:F.40, D:R.120 Salt bridges: D:R.120 QGD.5: 4 residues within 4Å: Chain D: F.40, Q.105 Chain E: R.120, K.123 3 PLIP interactions: 2 interactions with chain E, 1 interactions with chain D Hydrogen bonds: E:R.120, D:F.40 Salt bridges: E:R.120 QGD.6: 4 residues within 4Å: Chain E: F.40, Q.105 Chain F: R.120, K.123 3 PLIP interactions: 1 interactions with chain E, 2 interactions with chain F Hydrogen bonds: E:F.40, F:R.120 Salt bridges: F:R.120 QGD.7: 3 residues within 4Å: Chain F: F.40 Chain G: R.120, K.123 3 PLIP interactions: 1 interactions with chain F, 2 interactions with chain G Hydrogen bonds: F:F.40, G:R.120 Salt bridges: G:R.120

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hu, W. et al., Extended Sensor Paddles with Bound Lipids Revealed in Mechanosensitive Channel YnaI. To Be Published

Release Date

2020-10-28

Peptides

Low conductance mechanosensitive channel YnaI: ABCDEFG

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
G

B
A

C
B

D
C

E
D

F
E

G
F

Membrane

We predict this structure to be a membrane protein.
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Low conductance mechanosensitive channel YnaI

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