SMTL ID : 6usm.1

Structure of nuclease domain of human parvovirus B19 non-structural protein 1 in complex with zinc

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 3.37 Å

Oligo State

hetero-1-1-mer

Ligands

1 x GLC- GLC: alpha-D-glucopyranose-(1-4)-alpha-D-glucopyranose(Non-covalent)

GLC-GLC.1: 14 residues within 4Å: Chain A: N.13, D.15, K.16, W.63, A.64, D.66, R.67, E.112, E.154, P.155, Y.156, W.231, W.341, R.345 4 PLIP interactions: 4 interactions with chain A Hydrogen bonds: A:W.63, A:R.67, A:Y.156, A:R.345

1 x ZN: ZINC ION(Non-covalent)

ZN.2: 4 residues within 4Å: Chain B: E.72, H.81, H.83, K.145 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:E.72, B:H.81, B:H.83

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tewary, S.K., B19 Parvovirus Non-structural protein 1 in complex with zinc. To Be Published

Release Date

2020-12-09

Peptides

Maltodextrin-binding protein: A
Non-structural protein NS1: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Maltodextrin-binding protein

Non-structural protein NS1