SMTL ID : 6uud.1

Crystal structure of antibody 5D5 in complex with PfCSP N-terminal peptide

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.85 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG- FUC: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-[alpha-L-fucopyranose-(1-6)]2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-FUC.1: 5 residues within 4Å: Chain A: N.102 Chain B: N.31, D.32, Y.50 Chain C: K.10 2 PLIP interactions: 2 interactions with chain B Hydrophobic interactions: B:Y.50 Hydrogen bonds: B:N.31

1 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.2: 6 residues within 4Å: Chain A: L.146, V.174, S.182, L.183, S.184 Chain B: T.178 6 PLIP interactions: 3 interactions with chain A, 3 interactions with chain B Hydrogen bonds: A:S.184 Water bridges: A:S.184, A:S.184, B:S.176, B:T.178, B:T.178

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Thai, E. et al., A high-affinity antibody against the CSP N-terminal domain lacks Plasmodium falciparum inhibitory activity. J.Exp.Med. (2020)

Release Date

2020-07-15

Peptides

5D5 Antibody Fab, heavy chain: A
5D5 Antibody Fab, light chain: B
Circumsporozoite protein: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
H

B
L

C
A

5D5 Antibody Fab, heavy chain

5D5 Antibody Fab, light chain

Circumsporozoite protein