SMTL ID : 6uuz.1

Structure of ACLY in the presence of citrate and CoA

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

homo-tetramer

Ligands

4 x COA: COENZYME A(Non-covalent)

COA.1: 19 residues within 4Å: Chain A: F.572, A.573, S.574, R.576, S.577, I.597, A.598, E.599, A.624, T.625, V.626, G.664 Chain C: K.964, L.969, I.970, I.973, K.1017, K.1018, L.1021 12 PLIP interactions: 6 interactions with chain A, 6 interactions with chain C Hydrophobic interactions: A:E.599 Hydrogen bonds: A:A.573, A:S.574, A:S.574, A:E.599, C:I.970, C:I.970, C:K.1017 Salt bridges: A:R.576, C:K.964, C:K.1017, C:K.1018 COA.2: 19 residues within 4Å: Chain B: Q.505, F.572, A.573, S.574, R.576, S.577, I.597, A.598, E.599, T.625, V.626 Chain D: K.964, L.969, I.970, I.973, T.1014, K.1017, K.1018, L.1021 13 PLIP interactions: 6 interactions with chain D, 7 interactions with chain B Hydrogen bonds: D:I.970, D:I.970, D:K.1017, B:A.573, B:S.574, B:S.574, B:R.576, B:E.599 Salt bridges: D:K.964, D:K.1017, D:K.1018, B:R.576 Hydrophobic interactions: B:I.597 COA.3: 18 residues within 4Å: Chain A: K.964, L.969, I.970, I.973, K.1017, K.1018, L.1021 Chain C: Q.505, F.572, A.573, S.574, R.576, S.577, I.597, A.598, E.599, A.624, T.625 12 PLIP interactions: 7 interactions with chain A, 5 interactions with chain C Hydrogen bonds: A:I.970, A:I.970, A:K.1017, C:A.573, C:S.574, C:S.574 Salt bridges: A:K.964, A:K.1017, A:K.1018, A:K.1018, C:R.576 Hydrophobic interactions: C:I.597 COA.4: 18 residues within 4Å: Chain B: K.964, L.969, I.970, I.973, K.1017, K.1018, L.1021 Chain D: A.573, S.574, R.576, S.577, I.597, A.598, E.599, T.625, V.626, G.664, G.665 15 PLIP interactions: 9 interactions with chain D, 6 interactions with chain B Hydrophobic interactions: D:E.599 Hydrogen bonds: D:A.573, D:S.574, D:S.574, D:S.574, D:I.597, D:E.599, D:T.625, B:I.970, B:I.970, B:K.1017 Salt bridges: D:R.576, B:K.964, B:K.1017, B:K.1018

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Wei, X. et al., Molecular basis for acetyl-CoA production by ATP-citrate lyase. Nat.Struct.Mol.Biol. (2020)

Release Date

2020-01-01

Peptides

ATP-citrate synthase: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

ATP-citrate synthase

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