SMTL ID : 6uw3.1

The crystal structure of FbiA from Mycobacterium Smegmatis, GDP Bound form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x GDP: GUANOSINE-5'-DIPHOSPHATE(Non-covalent)

GDP.1: 22 residues within 4Å: Chain A: G.8, G.9, V.10, G.11, G.12, R.14, D.57, P.209, S.210, N.211, S.215, S.240, P.241, I.243, L.248, R.249, A.252, L.304, L.305, M.306 Ligands: GOL.2, CA.4 12 PLIP interactions: 12 interactions with chain A Hydrogen bonds: A:G.8, A:G.8, A:G.9, A:V.10, A:G.11, A:G.12, A:R.14, A:N.211, A:S.215, A:S.240, A:L.304, A:M.306 GDP.5: 15 residues within 4Å: Chain B: G.8, G.9, V.10, G.11, G.12, P.209, S.210, N.211, S.215, S.240, P.241, I.243, L.304, L.305, M.306 9 PLIP interactions: 9 interactions with chain B Hydrogen bonds: B:G.8, B:V.10, B:G.11, B:G.12, B:N.211, B:S.215, B:S.240, B:L.304, B:M.306

1 x GOL: GLYCEROL(Non-functional Binders)

GOL.2: 10 residues within 4Å: Chain A: D.45, P.56, D.57, F.98, F.165, Q.166, W.169, V.170 Ligands: GDP.1, CA.4 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.57, A:Q.166

3 x CA: CALCIUM ION(Non-covalent)

CA.3: 2 residues within 4Å: Chain A: E.144, Q.188 4 PLIP interactions: 3 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:E.144, A:E.144, A:Q.188, H2O.2 CA.4: 4 residues within 4Å: Chain A: D.45, D.57 Ligands: GDP.1, GOL.2 5 PLIP interactions: 3 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:D.45, A:D.57, A:D.57, H2O.1, H2O.2 CA.6: 1 residues within 4Å: Chain B: G.245 1 PLIP interactions: 1 interactions with chain B Metal complexes: B:G.245

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grinter, R. et al., Cellular and Structural Basis of Synthesis of the Unique Intermediate Dehydro-F420-0 in Mycobacteria. mSystems (2020)

Release Date

2020-05-13

Peptides

Phosphoenolpyruvate transferase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

B
A

Phosphoenolpyruvate transferase

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