SMTL ID : 6ux9.1

Crystal Structure Analysis of PIP4K2A

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.71 Å

Oligo State

homo-dimer

Ligands

2 x UHJ: N-[4-(5-{(Z)-[(2E)-2-imino-4-oxo-1,3-thiazolidin-5-ylidene]methyl}pyridin-3-yl)phenyl]methanesulfonamide(Non-covalent)

UHJ.1: 19 residues within 4Å: Chain A: F.123, I.132, K.134, I.136, P.165, F.167, I.183, T.185, R.186, N.187, V.188, F.189, K.198, T.221, L.266, I.323, D.324, I.325, L.326 15 PLIP interactions: 15 interactions with chain A Hydrophobic interactions: A:F.123, A:I.132, A:K.134, A:L.266, A:I.323, A:I.323 Hydrogen bonds: A:K.134, A:V.188, A:K.198, A:T.221, A:D.324, A:D.324, A:D.324, A:I.325, A:L.326 UHJ.2: 19 residues within 4Å: Chain B: F.123, I.132, K.134, I.136, P.165, F.167, I.183, T.185, R.186, N.187, V.188, F.189, K.198, T.221, L.266, I.323, D.324, I.325, L.326 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:F.123, B:F.123, B:L.266, B:I.323, B:I.323 Hydrogen bonds: B:V.188, B:K.198, B:T.221, B:T.221, B:D.324, B:D.324, B:I.325, B:L.326

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Manz, T.D. et al., Discovery and Structure-Activity Relationship Study of ( Z )-5-Methylenethiazolidin-4-one Derivatives as Potent and Selective Pan-phosphatidylinositol 5-Phosphate 4-Kinase Inhibitors. J.Med.Chem. (2020)

Release Date

2020-12-09

Peptides

Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Phosphatidylinositol 5-phosphate 4-kinase type-2 alpha