SMTL ID : 6uxg.1

Structure of V. metoecus NucC, trimer form

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.15 Å

Oligo State

homo-hexamer

Ligands

12 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 5 residues within 4Å: Chain A: N.13, L.14, H.15, A.16 Chain C: H.88 4 PLIP interactions: 1 interactions with chain C, 3 interactions with chain A Salt bridges: C:H.88, A:H.15 Hydrogen bonds: A:H.15, A:A.16 SO4.2: 2 residues within 4Å: Chain A: A.127, H.129 1 PLIP interactions: 1 interactions with chain A Salt bridges: A:H.129 SO4.3: 5 residues within 4Å: Chain A: H.88 Chain B: N.13, L.14, H.15, A.16 3 PLIP interactions: 1 interactions with chain A, 2 interactions with chain B Salt bridges: A:H.88, B:H.15 Hydrogen bonds: B:H.15 SO4.4: 3 residues within 4Å: Chain B: A.127, L.128, H.129 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:A.127 Salt bridges: B:H.129 SO4.5: 5 residues within 4Å: Chain B: H.88 Chain C: N.13, L.14, H.15, A.16 3 PLIP interactions: 1 interactions with chain B, 2 interactions with chain C Salt bridges: B:H.88, C:H.15 Hydrogen bonds: C:H.15 SO4.6: 3 residues within 4Å: Chain C: A.127, L.128, H.129 2 PLIP interactions: 2 interactions with chain C Hydrogen bonds: C:A.127 Salt bridges: C:H.129 SO4.7: 5 residues within 4Å: Chain D: N.13, L.14, H.15, A.16 Chain F: H.88 4 PLIP interactions: 3 interactions with chain D, 1 interactions with chain F Hydrogen bonds: D:H.15, D:A.16 Salt bridges: D:H.15, F:H.88 SO4.8: 2 residues within 4Å: Chain D: A.127, H.129 1 PLIP interactions: 1 interactions with chain D Salt bridges: D:H.129 SO4.9: 5 residues within 4Å: Chain D: H.88 Chain E: N.13, L.14, H.15, A.16 3 PLIP interactions: 1 interactions with chain D, 2 interactions with chain E Salt bridges: D:H.88, E:H.15 Hydrogen bonds: E:H.15 SO4.10: 3 residues within 4Å: Chain E: A.127, L.128, H.129 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:A.127 Salt bridges: E:H.129 SO4.11: 5 residues within 4Å: Chain E: H.88 Chain F: N.13, L.14, H.15, A.16 3 PLIP interactions: 1 interactions with chain E, 2 interactions with chain F Salt bridges: E:H.88, F:H.15 Hydrogen bonds: F:H.15 SO4.12: 3 residues within 4Å: Chain F: A.127, L.128, H.129 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:A.127 Salt bridges: F:H.129

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lau, R.K. et al., Structure and Mechanism of a Cyclic Trinucleotide-Activated Bacterial Endonuclease Mediating Bacteriophage Immunity. Mol.Cell (2020)

Release Date

2019-12-25

Peptides

Vibrio metoecus sp. RC341 NucC: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
A

E
B

F
C

Vibrio metoecus sp. RC341 NucC

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