SMTL ID : 6uyd.1 (1 other biounit)

Structure of Hepatitis C Virus Envelope Glycoprotein E2mc3-v1 redesigned core from genotype 1a bound to broadly neutralizing antibody AR3C

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

hetero-1-1-1-mer

Ligands

1 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 5 residues within 4Å: Chain A: N.111, S.112, T.113, F.115, K.117 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:F.115

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 4 residues within 4Å: Chain A: H.10, I.11, N.12, Y.86 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.11 Hydrogen bonds: A:I.11 NAG.3: 4 residues within 4Å: Chain A: N.19, S.21 Chain C: S.30, Y.92 3 PLIP interactions: 3 interactions with chain C Hydrophobic interactions: C:Y.92 Hydrogen bonds: C:S.30, C:Y.92 NAG.4: 2 residues within 4Å: Chain A: A.90, N.91 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:A.90

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

He, L. et al., Proof of concept for rational design of hepatitis C virus E2 core nanoparticle vaccines. Sci Adv (2020)

Release Date

2020-04-22

Peptides

Envelope glycoprotein E2: A
Fab AR3C heavy chain: B
Fab AR3C light chain: C

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
E

B
H

C
L

Envelope glycoprotein E2

Fab AR3C heavy chain

Fab AR3C light chain

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