SMTL ID : 6uyn.1

Crystal structure of influenza A virus hemagglutinin from A/Ohio/09/2015 bound to the stalk-binding CR6261 antibody Fab

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.85 Å

Oligo State

hetero-6-3-3-mer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 6 residues within 4Å: Chain A: N.81, E.83, N.104, C.107, P.154, R.238 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:R.238 NAG-NAG.5: 6 residues within 4Å: Chain E: N.81, E.83, N.104, C.107, P.154, R.238 1 PLIP interactions: 1 interactions with chain E Hydrogen bonds: E:R.238 NAG-NAG.9: 6 residues within 4Å: Chain I: N.81, E.83, N.104, C.107, P.154, R.238 1 PLIP interactions: 1 interactions with chain I Hydrogen bonds: I:R.238

6 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.2: 2 residues within 4Å: Chain A: K.39, N.40 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:K.39 Hydrogen bonds: A:N.40 NAG.4: 2 residues within 4Å: Chain B: N.498, T.500 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.498 NAG.6: 2 residues within 4Å: Chain E: K.39, N.40 2 PLIP interactions: 2 interactions with chain E Hydrophobic interactions: E:K.39 Hydrogen bonds: E:N.40 NAG.8: 2 residues within 4Å: Chain F: N.498, T.500 2 PLIP interactions: 2 interactions with chain F Hydrogen bonds: F:N.498, F:T.500 NAG.10: 2 residues within 4Å: Chain I: K.39, N.40 2 PLIP interactions: 2 interactions with chain I Hydrophobic interactions: I:K.39 Hydrogen bonds: I:N.40 NAG.12: 2 residues within 4Å: Chain J: N.498, T.500 1 PLIP interactions: 1 interactions with chain J Hydrogen bonds: J:N.498

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 3 residues within 4Å: Chain A: R.336 Chain B: G.345, I.350 Ligand excluded by PLIP CL.7: 3 residues within 4Å: Chain E: R.336 Chain F: G.345, I.350 Ligand excluded by PLIP CL.11: 3 residues within 4Å: Chain I: R.336 Chain J: G.345, I.350 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Edwards, T.E. et al., Crystal structure of influenza A virus hemagglutinin from A/Ohio/09/2015 bound to the stalk-binding CR6261 antibody Fab. To Be Published

Release Date

2020-09-02

Peptides

Hemagglutinin HA1 chain: ABEFIJ
CR6261 Fab heavy chain: CGK
CR6261 Fab light chain: DHL

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

E
A

F
B

I
A

J
B

C
H

G
H

K
H

D
L

H
L

L
L

Hemagglutinin HA1 chain

CR6261 Fab heavy chain

CR6261 Fab light chain

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