SMTL ID : 6v0k.1

Crystal structure of Penicillium verruculosum copalyl diphosphate synthase (PvCPS) alpha prenyltransferase domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.41 Å

Oligo State

homo-hexamer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: G.28, K.29, R.32, H.61, R.77, R.78, F.188 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:K.29, A:R.32, A:R.77 GOL.2: 5 residues within 4Å: Chain B: K.29, R.32, H.61, R.77, R.78 4 PLIP interactions: 4 interactions with chain B Hydrogen bonds: B:K.29, B:R.32, B:R.77, B:R.78 GOL.3: 7 residues within 4Å: Chain C: G.28, K.29, R.32, H.61, R.77, R.78, F.188 3 PLIP interactions: 3 interactions with chain C Hydrogen bonds: C:K.29, C:R.32, C:R.77 GOL.4: 5 residues within 4Å: Chain D: K.29, R.32, H.61, R.77, R.78 4 PLIP interactions: 4 interactions with chain D Hydrogen bonds: D:K.29, D:R.32, D:R.77, D:R.78 GOL.5: 7 residues within 4Å: Chain E: G.28, K.29, R.32, H.61, R.77, R.78, F.188 3 PLIP interactions: 3 interactions with chain E Hydrogen bonds: E:K.29, E:R.32, E:R.77 GOL.6: 5 residues within 4Å: Chain F: K.29, R.32, H.61, R.77, R.78 4 PLIP interactions: 4 interactions with chain F Hydrogen bonds: F:K.29, F:R.32, F:R.77, F:R.78

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ronnebaum, T.A. et al., Higher-order oligomerization of a chimeric alpha beta gamma bifunctional diterpene synthase with prenyltransferase and class II cyclase activities is concentration-dependent. J.Struct.Biol. (2020)

Release Date

2020-01-29

Peptides

Terpene synthase: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

E
A

F
B

Terpene synthase