SMTL ID : 6v0t.1

Crystal Structure of Catalytic Subunit of Bovine Pyruvate Dehydrogenase Phosphatase 1 - Catalytic Domain

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.10 Å

Oligo State

monomer

Ligands

5 x MN: MANGANESE (II) ION(Non-covalent)(Non-functional Binders)

MN.1: 3 residues within 4Å: Chain A: D.73, G.74 Ligands: MN.2 6 PLIP interactions: 2 interactions with chain A, 4 Ligand-Water interactions Metal complexes: A:D.73, A:G.74, H2O.1, H2O.1, H2O.4, H2O.6 MN.2: 4 residues within 4Å: Chain A: D.73, D.347, D.445 Ligands: MN.1 6 PLIP interactions: 3 interactions with chain A, 3 Ligand-Water interactions Metal complexes: A:D.73, A:D.347, A:D.445, H2O.1, H2O.3, H2O.4 MN.5: 2 residues within 4Å: Chain A: H.410, H.414 3 PLIP interactions: 2 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.410, A:H.414, H2O.1 MN.6: 4 residues within 4Å: Chain A: S.290, I.291, P.321 Ligands: SO4.3 No protein-ligand interaction detected (PLIP) MN.7: 1 residues within 4Å: Ligands: SO4.4 No protein-ligand interaction detected (PLIP)

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.3: 5 residues within 4Å: Chain A: S.290, I.291, D.292 Ligands: SO4.4, MN.6 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:I.291, A:D.292 SO4.4: 3 residues within 4Å: Chain A: D.292 Ligands: SO4.3, MN.7 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Guo, Y. et al., Crystal structure of the catalytic subunit of bovine pyruvate dehydrogenase phosphatase. Acta Crystallogr.,Sect.F (2020)

Release Date

2019-12-18

Peptides

[Pyruvate dehydrogenase [acetyl-transferring]]-phosphatase 1, mitochondrial: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

[Pyruvate dehydrogenase [acetyl-transferring]]-phosphatase 1, mitochondrial

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