SMTL ID : 6v11.1

Lon Protease from Yersinia pestis

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

homo-hexamer

Ligands

5 x ADP: ADENOSINE-5'-DIPHOSPHATE(Non-covalent)

ADP.1: 15 residues within 4Å: Chain A: D.71, H.72, Y.73, P.106, G.107, V.108, G.109, K.110, T.111, Y.241, I.249, H.253, K.257, V.289, R.290 10 PLIP interactions: 10 interactions with chain A Hydrogen bonds: A:H.72, A:Y.73, A:G.107, A:K.110, A:T.111, A:Y.241, A:K.257 Salt bridges: A:R.290 pi-Stacking: A:H.72 pi-Cation interactions: A:H.72 ADP.2: 16 residues within 4Å: Chain B: D.71, H.72, Y.73, L.75, G.107, V.108, G.109, K.110, T.111, S.112, Y.241, I.249, H.253, K.257, V.289, R.290 13 PLIP interactions: 13 interactions with chain B Hydrogen bonds: B:Y.73, B:G.107, B:G.109, B:K.110, B:T.111, B:T.111, B:T.111, B:S.112, B:Y.241, B:K.257 Salt bridges: B:R.290, B:R.290 pi-Cation interactions: B:H.72 ADP.3: 15 residues within 4Å: Chain C: D.71, H.72, Y.73, G.107, V.108, G.109, K.110, T.111, S.112, Y.241, I.249, H.253, K.257, V.289, R.290 14 PLIP interactions: 14 interactions with chain C Hydrogen bonds: C:Y.73, C:G.74, C:G.107, C:G.109, C:K.110, C:T.111, C:T.111, C:S.112, C:Y.241, C:K.257 Salt bridges: C:K.110, C:R.290, C:R.290 pi-Stacking: C:H.72 ADP.4: 15 residues within 4Å: Chain E: H.72, Y.73, L.75, P.106, G.107, V.108, G.109, K.110, T.111, S.112, Y.241, I.249, K.257, V.289, R.290 15 PLIP interactions: 15 interactions with chain E Hydrogen bonds: E:Y.73, E:Y.73, E:G.107, E:G.109, E:K.110, E:T.111, E:T.111, E:S.112, E:S.112, E:Y.241, E:K.257 Salt bridges: E:K.110, E:R.290, E:R.290 pi-Cation interactions: E:H.72 ADP.5: 15 residues within 4Å: Chain F: D.71, H.72, Y.73, G.107, V.108, G.109, K.110, T.111, Y.241, I.249, H.253, L.254, K.257, V.289, R.290 11 PLIP interactions: 11 interactions with chain F Hydrogen bonds: F:Y.73, F:G.107, F:G.109, F:K.110, F:T.111, F:T.111, F:Y.241, F:K.257 Salt bridges: F:R.290, F:R.290 pi-Stacking: F:H.72

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Shin, M. et al., Structural basis for distinct operational modes and protease activation in AAA+ protease Lon. Sci Adv (2020)

Release Date

2020-01-22

Peptides

Lon protease: ABCDEF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

E
E

F
F

Lon protease