- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-60-mer
- Ligands
- 60 x DC: 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE(Non-covalent)
- 60 x DA: 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE(Non-covalent)
DA.2: 9 residues within 4Å:- Chain A: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
- Ligands: DC.1
Protein-ligand interaction information (PLIP) not availableDA.4: 9 residues within 4Å:- Chain B: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
- Ligands: DC.3
Protein-ligand interaction information (PLIP) not availableDA.6: 9 residues within 4Å:- Chain C: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
- Ligands: DC.5
Protein-ligand interaction information (PLIP) not availableDA.8: 9 residues within 4Å:- Chain D: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
- Ligands: DC.7
Protein-ligand interaction information (PLIP) not availableDA.10: 9 residues within 4Å:- Chain E: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
- Ligands: DC.9
Protein-ligand interaction information (PLIP) not availableDA.12: 9 residues within 4Å:- Chain F: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
- Ligands: DC.11
Protein-ligand interaction information (PLIP) not availableDA.14: 9 residues within 4Å:- Chain G: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
- Ligands: DC.13
Protein-ligand interaction information (PLIP) not availableDA.16: 9 residues within 4Å:- Chain H: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
- Ligands: DC.15
31 PLIP interactions:4 interactions with chain K, 4 interactions with chain I, 4 interactions with chain O, 4 interactions with chain J, 4 interactions with chain M, 4 interactions with chain N, 4 interactions with chain L, 3 interactions with chain H- Hydrogen bonds: K:N.393, K:S.416, K:G.423, I:N.393, I:S.416, I:G.423, O:N.393, O:S.416, O:G.423, J:N.393, J:S.416, J:G.423, M:N.393, M:S.416, M:G.423, N:N.393, N:S.416, N:G.423, L:N.393, L:S.416, L:G.423, H:N.393, H:S.416, H:G.423
- pi-Cation interactions: K:R.92, I:R.92, O:R.92, J:R.92, M:R.92, N:R.92, L:R.92
DA.18: 9 residues within 4Å:- Chain I: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
- Ligands: DC.17
Protein-ligand interaction information (PLIP) not availableDA.20: 9 residues within 4Å:- Chain J: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
- Ligands: DC.19
Protein-ligand interaction information (PLIP) not availableDA.22: 9 residues within 4Å:- Chain K: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
- Ligands: DC.21
Protein-ligand interaction information (PLIP) not availableDA.24: 9 residues within 4Å:- Chain L: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
- Ligands: DC.23
Protein-ligand interaction information (PLIP) not availableDA.26: 9 residues within 4Å:- Chain M: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
- Ligands: DC.25
Protein-ligand interaction information (PLIP) not availableDA.28: 9 residues within 4Å:- Chain N: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
- Ligands: DC.27
Protein-ligand interaction information (PLIP) not availableDA.30: 9 residues within 4Å:- Chain O: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
- Ligands: DC.29
Protein-ligand interaction information (PLIP) not availableDA.32: 9 residues within 4Å:- Chain P: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
- Ligands: DC.31
Protein-ligand interaction information (PLIP) not availableDA.34: 9 residues within 4Å:- Chain Q: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
- Ligands: DC.33
Protein-ligand interaction information (PLIP) not availableDA.36: 9 residues within 4Å:- Chain R: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
- Ligands: DC.35
Protein-ligand interaction information (PLIP) not availableDA.38: 9 residues within 4Å:- Chain S: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
- Ligands: DC.37
Protein-ligand interaction information (PLIP) not availableDA.40: 9 residues within 4Å:- Chain T: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
- Ligands: DC.39
Protein-ligand interaction information (PLIP) not availableDA.42: 9 residues within 4Å:- Chain U: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
- Ligands: DC.41
Protein-ligand interaction information (PLIP) not availableDA.44: 9 residues within 4Å:- Chain V: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
- Ligands: DC.43
Protein-ligand interaction information (PLIP) not availableDA.46: 9 residues within 4Å:- Chain W: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
- Ligands: DC.45
31 PLIP interactions:4 interactions with chain X, 4 interactions with chain Y, 4 interactions with chain 1, 4 interactions with chain 2, 4 interactions with chain 3, 4 interactions with chain Z, 3 interactions with chain W, 4 interactions with chain 0- Hydrogen bonds: X:N.393, X:S.416, X:G.423, Y:N.393, Y:S.416, Y:G.423, 1:N.393, 1:S.416, 1:G.423, 2:N.393, 2:S.416, 2:G.423, 3:N.393, 3:S.416, 3:G.423, Z:N.393, Z:S.416, Z:G.423, W:N.393, W:S.416, W:G.423, 0:N.393, 0:S.416, 0:G.423
- pi-Cation interactions: X:R.92, Y:R.92, 1:R.92, 2:R.92, 3:R.92, Z:R.92, 0:R.92
DA.48: 9 residues within 4Å:- Chain X: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
- Ligands: DC.47
Protein-ligand interaction information (PLIP) not availableDA.50: 9 residues within 4Å:- Chain Y: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
- Ligands: DC.49
Protein-ligand interaction information (PLIP) not availableDA.52: 9 residues within 4Å:- Chain Z: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
- Ligands: DC.51
Protein-ligand interaction information (PLIP) not availableDA.54: 9 residues within 4Å:- Chain 0: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
- Ligands: DC.53
Protein-ligand interaction information (PLIP) not availableDA.56: 9 residues within 4Å:- Chain 1: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
- Ligands: DC.55
Protein-ligand interaction information (PLIP) not availableDA.58: 9 residues within 4Å:- Chain 2: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
- Ligands: DC.57
Protein-ligand interaction information (PLIP) not availableDA.60: 9 residues within 4Å:- Chain 3: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
- Ligands: DC.59
Protein-ligand interaction information (PLIP) not availableDA.62: 9 residues within 4Å:- Chain 4: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
- Ligands: DC.61
Protein-ligand interaction information (PLIP) not availableDA.64: 9 residues within 4Å:- Chain 5: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
- Ligands: DC.63
Protein-ligand interaction information (PLIP) not availableDA.66: 9 residues within 4Å:- Chain 6: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
- Ligands: DC.65
Protein-ligand interaction information (PLIP) not availableDA.68: 9 residues within 4Å:- Chain 7: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
- Ligands: DC.67
Protein-ligand interaction information (PLIP) not availableDA.70: 9 residues within 4Å:- Chain 8: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
- Ligands: DC.69
Protein-ligand interaction information (PLIP) not availableDA.72: 9 residues within 4Å:- Chain 9: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
- Ligands: DC.71
Protein-ligand interaction information (PLIP) not availableDA.74: 9 residues within 4Å:- Ligands: DC.73
- Chain a: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
Protein-ligand interaction information (PLIP) not availableDA.76: 9 residues within 4Å:- Ligands: DC.75
- Chain b: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
31 PLIP interactions:4 interactions with chain c, 4 interactions with chain f, 4 interactions with chain g, 3 interactions with chain b, 4 interactions with chain h, 4 interactions with chain i, 4 interactions with chain d, 4 interactions with chain e- Hydrogen bonds: c:N.393, c:S.416, c:G.423, f:N.393, f:S.416, f:G.423, g:N.393, g:S.416, g:G.423, b:N.393, b:S.416, b:G.423, h:N.393, h:S.416, h:G.423, i:N.393, i:S.416, i:G.423, d:N.393, d:S.416, d:G.423, e:N.393, e:S.416, e:G.423
- pi-Cation interactions: c:R.92, f:R.92, g:R.92, h:R.92, i:R.92, d:R.92, e:R.92
DA.78: 9 residues within 4Å:- Ligands: DC.77
- Chain c: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
Protein-ligand interaction information (PLIP) not availableDA.80: 9 residues within 4Å:- Ligands: DC.79
- Chain d: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
Protein-ligand interaction information (PLIP) not availableDA.82: 9 residues within 4Å:- Ligands: DC.81
- Chain e: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
Protein-ligand interaction information (PLIP) not availableDA.84: 9 residues within 4Å:- Ligands: DC.83
- Chain f: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
Protein-ligand interaction information (PLIP) not availableDA.86: 9 residues within 4Å:- Ligands: DC.85
- Chain g: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
Protein-ligand interaction information (PLIP) not availableDA.88: 9 residues within 4Å:- Ligands: DC.87
- Chain h: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
Protein-ligand interaction information (PLIP) not availableDA.90: 9 residues within 4Å:- Ligands: DC.89
- Chain i: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
Protein-ligand interaction information (PLIP) not availableDA.92: 9 residues within 4Å:- Ligands: DC.91
- Chain j: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
Protein-ligand interaction information (PLIP) not availableDA.94: 9 residues within 4Å:- Ligands: DC.93
- Chain k: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
Protein-ligand interaction information (PLIP) not availableDA.96: 9 residues within 4Å:- Ligands: DC.95
- Chain l: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
Protein-ligand interaction information (PLIP) not availableDA.98: 9 residues within 4Å:- Ligands: DC.97
- Chain m: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
Protein-ligand interaction information (PLIP) not availableDA.100: 9 residues within 4Å:- Ligands: DC.99
- Chain n: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
Protein-ligand interaction information (PLIP) not availableDA.102: 9 residues within 4Å:- Ligands: DC.101
- Chain o: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
Protein-ligand interaction information (PLIP) not availableDA.104: 9 residues within 4Å:- Ligands: DC.103
- Chain p: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
Protein-ligand interaction information (PLIP) not availableDA.106: 9 residues within 4Å:- Ligands: DC.105
- Chain q: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
31 PLIP interactions:4 interactions with chain x, 4 interactions with chain u, 4 interactions with chain w, 3 interactions with chain q, 4 interactions with chain t, 4 interactions with chain s, 4 interactions with chain r, 4 interactions with chain v- Hydrogen bonds: x:N.393, x:S.416, x:G.423, u:N.393, u:S.416, u:G.423, w:N.393, w:S.416, w:G.423, q:N.393, q:S.416, q:G.423, t:N.393, t:S.416, t:G.423, s:N.393, s:S.416, s:G.423, r:N.393, r:S.416, r:G.423, v:N.393, v:S.416, v:G.423
- pi-Cation interactions: x:R.92, u:R.92, w:R.92, t:R.92, s:R.92, r:R.92, v:R.92
DA.108: 9 residues within 4Å:- Ligands: DC.107
- Chain r: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
Protein-ligand interaction information (PLIP) not availableDA.110: 9 residues within 4Å:- Ligands: DC.109
- Chain s: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
Protein-ligand interaction information (PLIP) not availableDA.112: 9 residues within 4Å:- Ligands: DC.111
- Chain t: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
Protein-ligand interaction information (PLIP) not availableDA.114: 9 residues within 4Å:- Ligands: DC.113
- Chain u: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
Protein-ligand interaction information (PLIP) not availableDA.116: 9 residues within 4Å:- Ligands: DC.115
- Chain v: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
Protein-ligand interaction information (PLIP) not availableDA.118: 9 residues within 4Å:- Ligands: DC.117
- Chain w: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
Protein-ligand interaction information (PLIP) not availableDA.120: 9 residues within 4Å:- Ligands: DC.119
- Chain x: V.203, P.204, N.393, H.414, P.415, S.416, G.421, G.423
Protein-ligand interaction information (PLIP) not available- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mietzsch, M. et al., Comparative Analysis of the Capsid Structures of AAVrh.10, AAVrh.39, and AAV8. J.Virol. (2020)
- Release Date
- 2019-12-11
- Peptides
- Capsid protein VP1: ABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789abcdefghijklmnopqrstuvwx
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
LM
MN
NO
OP
PQ
QR
RS
ST
TU
UV
VW
WX
XY
YZ
Z0
a1
b2
c3
d4
e5
f6
g7
h8
i9
ja
kb
lc
md
ne
of
pg
qh
ri
sj
tk
ul
vm
wn
xo
yp
zq
1r
2s
3t
4u
5v
6w
7x
8
- Coordinates
- PDB Format
- Method
- ELECTRON MICROSCOPY
- Oligo State
- homo-60-mer
- Ligands
- 60 x DC: 2'-DEOXYCYTIDINE-5'-MONOPHOSPHATE(Non-covalent)
- 60 x DA: 2'-DEOXYADENOSINE-5'-MONOPHOSPHATE(Non-covalent)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Mietzsch, M. et al., Comparative Analysis of the Capsid Structures of AAVrh.10, AAVrh.39, and AAV8. J.Virol. (2020)
- Release Date
- 2019-12-11
- Peptides
- Capsid protein VP1: ABCDEFGHIJKLMNOPQRSTUVWXYZ0123456789abcdefghijklmnopqrstuvwx
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
BC
CD
DE
EF
FG
GH
HI
IJ
JK
KL
LM
MN
NO
OP
PQ
QR
RS
ST
TU
UV
VW
WX
XY
YZ
Z0
a1
b2
c3
d4
e5
f6
g7
h8
i9
ja
kb
lc
md
ne
of
pg
qh
ri
sj
tk
ul
vm
wn
xo
yp
zq
1r
2s
3t
4u
5v
6w
7x
8