6v25.1 | SWISS-MODEL Template Library

SMTL ID : 6v25.1

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.78 Å

Oligo State

hetero-2-2-mer

Ligands

2 x ASP: ASPARTIC ACID(Non-covalent)

ASP.1:	14 residues within 4Å: Chain A: G.18, T.19, Y.32, V.34, G.64, S.65, Q.66, G.95, T.96, D.97, A.121, M.122 Chain B: N.255, E.290 12 PLIP interactions: 8 interactions with chain A, 2 Ligand-Ligand interactions, 2 interactions with chain B Hydrogen bonds: A:T.19, A:T.19, A:S.65, A:Q.66, A:T.96, A:D.97, D.1, D.1, B:N.255, B:E.290 Water bridges: A:I.20, A:Y.32
ASP.2:	12 residues within 4Å: Chain C: G.18, T.19, G.64, S.65, Q.66, G.95, T.96, D.97, A.121, M.122 Chain D: N.255, E.290 12 PLIP interactions: 10 interactions with chain C, 2 interactions with chain D Hydrogen bonds: C:T.19, C:T.19, C:S.65, C:Q.66, C:T.96, C:D.97, C:D.97, D:N.255, D:E.290 Water bridges: C:T.19, C:I.20, C:M.122

Links

RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP

Citation

Lubkowski, J. et al., Mechanism of Catalysis by l-Asparaginase. Biochemistry (2020)

Release Date

2020-05-20

Peptides

L-asparaginase 2: AC
L-asparaginase 2: BD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
B

B
C

D
D