SMTL ID : 6v2s.2 (1 other biounit)

Crystal Structure of chromodomain of MPP8 in complex with inhibitor UNC3866

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.60 Å

Oligo State

monomer

Ligands

1 x 5R0- PHE- ALA- LEU- ELY- 5R5: UNC3866(Non-covalent)

5R0-PHE-ALA-LEU-ELY-5R5.1: 18 residues within 4Å: Chain A: D.3, V.4, F.5, E.6, V.7, W.26, Y.29, D.33, T.35, E.37, P.38, H.41, L.42, D.44, C.45, E.47 Ligands: UNX.8, UNX.12 21 PLIP interactions: 21 interactions with chain A Hydrophobic interactions: A:V.4, A:F.5, A:E.6, A:V.7, A:W.26, A:W.26, A:W.26, A:Y.29, A:T.35, A:L.42 Hydrogen bonds: A:D.3, A:F.5, A:F.5, A:V.7, A:E.37, A:H.41, A:D.44, A:D.44 Water bridges: A:D.33 Salt bridges: A:D.33 pi-Cation interactions: A:F.5

11 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.2: 3 residues within 4Å: Chain A: M.13, K.14 Ligands: UNX.4 No protein-ligand interaction detected (PLIP) UNX.3: 2 residues within 4Å: Chain A: K.14, W.36 No protein-ligand interaction detected (PLIP) UNX.4: 3 residues within 4Å: Chain A: K.14, T.15 Ligands: UNX.2 No protein-ligand interaction detected (PLIP) UNX.5: 2 residues within 4Å: Chain A: T.35, W.36 No protein-ligand interaction detected (PLIP) UNX.6: 4 residues within 4Å: Chain A: V.48, E.51, F.52 Ligands: UNX.7 No protein-ligand interaction detected (PLIP) UNX.7: 4 residues within 4Å: Chain A: K.9, I.10, V.48 Ligands: UNX.6 No protein-ligand interaction detected (PLIP) UNX.8: 3 residues within 4Å: Chain A: F.5, E.6 Ligands: 5R0-PHE-ALA-LEU-ELY-5R5.1 No protein-ligand interaction detected (PLIP) UNX.9: 3 residues within 4Å: Chain A: P.38, E.39, I.40 No protein-ligand interaction detected (PLIP) UNX.10: 4 residues within 4Å: Chain A: D.12, M.13, F.52, I.56 No protein-ligand interaction detected (PLIP) UNX.11: 1 residues within 4Å: Chain A: V.20 No protein-ligand interaction detected (PLIP) UNX.12: 1 residues within 4Å: Ligands: 5R0-PHE-ALA-LEU-ELY-5R5.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dong, C. et al., Structural Basis for the Binding Selectivity of Human CDY Chromodomains. Cell Chem Biol (2020)

Release Date

2019-12-25

Peptides

M-phase phosphoprotein 8: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

M-phase phosphoprotein 8

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