SMTL ID : 6v3f.1

Structure of NPC1-like intracellular cholesterol transporter 1 (NPC1L1)

Coordinates

PDB Format

Method

ELECTRON MICROSCOPY

Oligo State

monomer

Ligands

4 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 1 residues within 4Å: Chain A: N.477 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 1 residues within 4Å: Chain A: N.486 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 4 residues within 4Å: Chain A: N.889, S.891, S.892, Q.1024 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 2 residues within 4Å: Chain A: H.380, N.1018 No protein-ligand interaction detected (PLIP)

10 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.5: 2 residues within 4Å: Chain A: L.31, N.33 No protein-ligand interaction detected (PLIP) NAG.6: 6 residues within 4Å: Chain A: Y.3, N.118, V.119, T.120, E.137, I.213 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:I.213 Hydrogen bonds: A:N.118 NAG.7: 2 residues within 4Å: Chain A: N.224, E.225 No protein-ligand interaction detected (PLIP) NAG.8: 2 residues within 4Å: Chain A: N.396, D.589 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.396, A:D.589 NAG.9: 4 residues within 4Å: Chain A: S.399, K.401, S.409, N.411 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.409, A:N.411 NAG.10: 2 residues within 4Å: Chain A: W.437, N.444 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:W.437 Hydrogen bonds: A:N.444 NAG.11: 1 residues within 4Å: Chain A: N.586 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.586 NAG.12: 4 residues within 4Å: Chain A: E.893, A.894, N.897, G.904 1 PLIP interactions: 1 interactions with chain A Hydrophobic interactions: A:E.893 NAG.13: 3 residues within 4Å: Chain A: C.974, N.976, Q.988 No protein-ligand interaction detected (PLIP) NAG.14: 2 residues within 4Å: Chain A: N.1056, D.1060 No protein-ligand interaction detected (PLIP)

1 x CLR: CHOLESTEROL(Non-covalent)

CLR.15: 10 residues within 4Å: Chain A: P.359, V.360, W.363, T.387, Q.853, P.878, I.1078, S.1079, F.1082, Y.1083 7 PLIP interactions: 7 interactions with chain A Hydrophobic interactions: A:P.359, A:V.360, A:Q.853, A:P.878, A:I.1078, A:F.1082, A:Y.1083

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Huang, C.S. et al., Cryo-EM structures of NPC1L1 reveal mechanisms of cholesterol transport and ezetimibe inhibition. Sci Adv (2020)

Release Date

2020-07-01

Peptides

NPC1-like intracellular cholesterol transporter 1: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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NPC1-like intracellular cholesterol transporter 1

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