SMTL ID : 6v43.1

Crystal structure of the flavin oxygenase with cofactor and substrate bound involved in folate catabolism

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.77 Å

Oligo State

homo-dimer

Ligands

2 x LUZ: pteridine-2,4(1H,3H)-dione(Non-covalent)

LUZ.1: 12 residues within 4Å: Chain A: G.81, N.82, Y.83, Q.85, G.152, G.153, S.154, H.198, N.321, Q.338, M.417 Ligands: FAD.2 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:N.82, A:N.82, A:Y.83, A:Q.85, A:G.152, A:N.321 Water bridges: A:S.154 LUZ.3: 12 residues within 4Å: Chain B: G.81, N.82, Y.83, Q.85, G.152, G.153, S.154, H.198, N.321, Q.338, M.417 Ligands: FAD.4 5 PLIP interactions: 5 interactions with chain B Hydrogen bonds: B:N.82, B:N.82, B:Q.85, B:G.152, B:N.321

2 x FAD: FLAVIN-ADENINE DINUCLEOTIDE(Non-covalent)

FAD.2: 37 residues within 4Å: Chain A: F.31, Y.34, P.75, R.76, G.77, T.78, G.79, T.80, G.81, N.82, Q.85, A.86, L.97, P.115, P.138, S.139, T.140, A.144, T.145, G.148, F.149, A.151, G.152, G.153, S.154, G.155, Y.200, G.201, G.204, I.205, I.206, W.320, N.321, H.322, L.325, N.438 Ligands: LUZ.1 27 PLIP interactions: 27 interactions with chain A Hydrophobic interactions: A:F.31, A:T.140, A:N.321, A:L.325 Hydrogen bonds: A:P.75, A:G.77, A:T.78, A:T.78, A:T.78, A:G.79, A:T.80, A:T.80, A:T.80, A:G.81, A:S.139, A:T.140, A:T.145, A:G.148, A:S.154, A:G.155, A:G.155, A:I.206, A:I.206, A:N.321, A:N.438 Water bridges: A:A.86, A:T.145 FAD.4: 38 residues within 4Å: Chain B: F.31, Y.34, P.75, R.76, G.77, T.78, G.79, T.80, G.81, N.82, Q.85, A.86, L.97, P.115, P.138, S.139, T.140, A.144, T.145, G.148, F.149, A.151, G.152, G.153, S.154, G.155, G.156, Y.200, G.201, G.204, I.205, I.206, W.320, N.321, H.322, L.325, N.438 Ligands: LUZ.3 23 PLIP interactions: 23 interactions with chain B Hydrophobic interactions: B:F.31, B:T.140, B:N.321, B:L.325 Hydrogen bonds: B:G.77, B:T.78, B:T.78, B:G.79, B:T.80, B:T.80, B:G.81, B:Q.85, B:S.139, B:T.145, B:S.154, B:G.155, B:G.155, B:I.206, B:I.206, B:N.321, B:N.438 Water bridges: B:A.86, B:G.148

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Begley, T.P. et al., A novel flavoenzyme catalyzed Baeyer-Villiger type rearrangement in bacterial folic acid catabolic pathway. To Be Published

Release Date

2020-12-09

Peptides

FAD/FMN-containing dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

FAD/FMN-containing dehydrogenase

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