SMTL ID : 6v44.1

The crystal structure of hemagglutinin from swine influenza virus A/swine/Missouri/A01727926/2015

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.20 Å

Oligo State

hetero-3-3-mer

Ligands

3 x NAG- NAG- BMA- MAN- MAN- MAN: alpha-D-mannopyranose-(1-2)-alpha-D-mannopyranose-(1-3)-[alpha-D-mannopyranose-(1-6)]beta-D-mannopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose

NAG-NAG-BMA-MAN-MAN-MAN.1: 6 residues within 4Å: Chain A: N.167, T.169, L.244 Chain E: S.221, P.223, W.224 2 PLIP interactions: 1 interactions with chain A, 1 interactions with chain E Hydrophobic interactions: A:L.244 Hydrogen bonds: E:W.224 NAG-NAG-BMA-MAN-MAN-MAN.2: 6 residues within 4Å: Chain A: S.221, P.223, W.224 Chain C: N.167, T.169, L.244 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: C:L.244 Hydrogen bonds: A:W.224 NAG-NAG-BMA-MAN-MAN-MAN.3: 6 residues within 4Å: Chain C: S.221, P.223, W.224 Chain E: N.167, T.169, L.244 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain E Hydrogen bonds: C:W.224 Hydrophobic interactions: E:L.244

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 3 residues within 4Å: Chain A: S.46, N.299, G.315 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.46, A:N.299 NAG.5: 3 residues within 4Å: Chain C: S.46, N.299, G.315 4 PLIP interactions: 4 interactions with chain C Hydrogen bonds: C:S.46, C:N.299 Water bridges: C:N.299, C:N.299 NAG.6: 3 residues within 4Å: Chain E: S.46, N.299, G.315 2 PLIP interactions: 2 interactions with chain E Hydrogen bonds: E:S.46, E:N.299

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, H. et al., Molecular characterization and three-dimensional structures of avian H8, H11, H14, H15 and swine H4 influenza virus hemagglutinins. Heliyon (2020)

Release Date

2020-06-17

Peptides

Hemagglutinin HA1 chain: ACE
Hemagglutinin HA2 chain: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

Hemagglutinin HA1 chain

Hemagglutinin HA2 chain