SMTL ID : 6v48.1 (1 other biounit)

The crystal structure of hemagglutinin from A/mallard/Gurjev/263/1982 (H14N5)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.00 Å

Oligo State

hetero-3-3-mer

Ligands

6 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 4 residues within 4Å: Chain A: T.49, N.302, V.303, G.318 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 4 residues within 4Å: Chain B: N.147, E.150, N.154, T.156 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 4 residues within 4Å: Chain C: T.49, N.302, V.303, G.318 No protein-ligand interaction detected (PLIP) NAG-NAG.4: 4 residues within 4Å: Chain D: N.147, E.150, N.154, T.156 No protein-ligand interaction detected (PLIP) NAG-NAG.5: 4 residues within 4Å: Chain E: T.49, N.302, V.303, G.318 No protein-ligand interaction detected (PLIP) NAG-NAG.6: 5 residues within 4Å: Chain F: N.147, E.150, S.151, N.154, T.156 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:N.147

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.7: 3 residues within 4Å: Chain A: N.170, T.172 Chain E: S.224 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain A Hydrogen bonds: E:S.224 Hydrophobic interactions: A:T.172 NAG.8: 3 residues within 4Å: Chain A: S.224 Chain C: N.170, T.172 2 PLIP interactions: 1 interactions with chain C, 1 interactions with chain A Hydrophobic interactions: C:T.172 Hydrogen bonds: A:S.224 NAG.9: 3 residues within 4Å: Chain C: S.224 Chain E: N.170, T.172 2 PLIP interactions: 1 interactions with chain E, 1 interactions with chain C Hydrophobic interactions: E:T.172 Hydrogen bonds: C:S.224

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, H. et al., Molecular characterization and three-dimensional structures of avian H8, H11, H14, H15 and swine H4 influenza virus hemagglutinins. Heliyon (2020)

Release Date

2020-06-17

Peptides

Hemagglutinin HA1 chain: ACE
Hemagglutinin HA2 chain: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
E

E
K

B
B

D
F

F
L

Hemagglutinin HA1 chain

Hemagglutinin HA2 chain

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