SMTL ID : 6v49.1

The crystal structure of hemagglutinin from A/wedge-tailed shearwater/Western Australia/2576/1979 (H15N9)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.50 Å

Oligo State

hetero-3-3-mer

Ligands

3 x NAG- NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose-(1-4)-2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG-NAG.1: 2 residues within 4Å: Chain A: N.29, L.320 No protein-ligand interaction detected (PLIP) NAG-NAG.2: 2 residues within 4Å: Chain C: N.29, L.320 No protein-ligand interaction detected (PLIP) NAG-NAG.3: 2 residues within 4Å: Chain E: N.29, L.320 No protein-ligand interaction detected (PLIP)

3 x NAG: 2-acetamido-2-deoxy-beta-D-glucopyranose(Post Translational Modification)

NAG.4: 4 residues within 4Å: Chain A: R.302 Chain B: E.72, N.82, R.85 No protein-ligand interaction detected (PLIP) NAG.5: 4 residues within 4Å: Chain C: R.302 Chain D: E.72, N.82, R.85 1 PLIP interactions: 1 interactions with chain D Hydrogen bonds: D:R.85 NAG.6: 4 residues within 4Å: Chain E: R.302 Chain F: E.72, N.82, R.85 1 PLIP interactions: 1 interactions with chain F Hydrogen bonds: F:R.85

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Yang, H. et al., Molecular characterization and three-dimensional structures of avian H8, H11, H14, H15 and swine H4 influenza virus hemagglutinins. Heliyon (2020)

Release Date

2020-06-17

Peptides

Hemagglutinin HA1 chain: ACE
Hemagglutinin HA2 chain: BDF

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

C
C

E
E

B
B

D
D

F
F

Hemagglutinin HA1 chain

Hemagglutinin HA2 chain