SMTL ID : 6v4p.1

Structure of the integrin AlphaIIbBeta3-Abciximab complex

Coordinates

PDB Format Compare

Method

ELECTRON MICROSCOPY

Oligo State

hetero-1-1-1-1-mer

Ligands

6 x CA: CALCIUM ION(Non-covalent)

CA.1: 5 residues within 4Å: Chain A: E.274, D.276, D.278, T.281, E.283 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.276, A:D.278, A:T.281, A:T.281, A:E.283 CA.2: 5 residues within 4Å: Chain A: D.328, N.330, D.332, R.334, D.336 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.328, A:D.332, A:R.334, A:D.336, A:D.336 CA.3: 5 residues within 4Å: Chain A: D.396, D.398, D.400, Y.402, D.404 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.396, A:D.398, A:D.400, A:Y.402, A:D.404 CA.4: 5 residues within 4Å: Chain A: D.457, D.459, N.461, Y.463, D.465 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.457, A:D.459, A:Y.463, A:D.465, A:D.465 CA.6: 6 residues within 4Å: Chain B: S.149, M.150, D.152, D.153, D.277, M.361 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:S.149, B:D.152, B:D.153, B:M.361 CA.7: 5 residues within 4Å: Chain B: D.184, N.241, D.243, P.245, E.246 4 PLIP interactions: 4 interactions with chain B Metal complexes: B:D.184, B:D.243, B:D.243, B:P.245

1 x MG: MAGNESIUM ION(Non-covalent)

MG.5: 4 residues within 4Å: Chain B: S.147, S.149, E.246, D.277 2 PLIP interactions: 2 interactions with chain B Metal complexes: B:S.147, B:E.246

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nesic, D. et al., Cryo-Electron Microscopy Structure of the alpha IIb beta 3-Abciximab Complex. Arterioscler Thromb Vasc Biol. (2020)

Release Date

2020-02-05

Peptides

Integrin alpha-IIb: A
Integrin beta-3: B
Abciximab, heavy chain: C
Abciximab, light chain: D

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
C

D
D

Integrin alpha-IIb

Integrin beta-3

Abciximab, heavy chain

Abciximab, light chain