SMTL ID : 6v4w.2 (1 other biounit)

The crystal structure of a beta-lactamase from Chitinophaga pinensis DSM 2588

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.29 Å

Oligo State

monomer

Ligands

1 x MES: 2-(N-MORPHOLINO)-ETHANESULFONIC ACID(Non-covalent)

MES.1: 8 residues within 4Å: Chain A: S.50, W.87, S.113, T.199, K.217, T.218, G.219, S.220 8 PLIP interactions: 8 interactions with chain A Hydrogen bonds: A:S.50, A:S.113, A:T.218 Water bridges: A:S.50, A:K.217, A:S.220, A:S.220 Salt bridges: A:K.217

1 x FMT: FORMIC ACID(Non-functional Binders)

FMT.2: 3 residues within 4Å: Chain A: H.24, D.44, H.45 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:H.45, A:H.45

1 x ACT: ACETATE ION(Non-functional Binders)

ACT.3: 6 residues within 4Å: Chain A: G.139, D.141, S.142, L.167, A.168, Q.171 3 PLIP interactions: 3 interactions with chain A Hydrogen bonds: A:D.141, A:S.142, A:Q.171

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 3 residues within 4Å: Chain A: P.209, R.270, W.273 Ligand excluded by PLIP CL.5: 7 residues within 4Å: Chain A: T.197, T.198, T.199, G.200, P.201, R.205, H.216 Ligand excluded by PLIP CL.6: 5 residues within 4Å: Chain A: Q.49, W.156, Q.159, S.221, D.222 Ligand excluded by PLIP CL.7: 2 residues within 4Å: Chain A: Q.73, V.74 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Tan, K. et al., The crystal structure of a beta-lactamase from Chitinophaga pinensis DSM 2588. To Be Published

Release Date

2019-12-18

Peptides

Beta-lactamase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

Beta-lactamase

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