SMTL ID : 6v63.2 (1 other biounit)

SETD3 WT in Complex with an Actin Peptide with His73 Replaced with Glutamine

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.02 Å

Oligo State

hetero-1-1-mer

Ligands

16 x EDO: 1,2-ETHANEDIOL(Non-functional Binders)

EDO.1: 4 residues within 4Å: Chain A: E.7 Chain B: I.286, G.316, T.317 Ligand excluded by PLIP EDO.3: 5 residues within 4Å: Chain B: A.362, A.381, I.410, F.411, G.414 Ligand excluded by PLIP EDO.4: 3 residues within 4Å: Chain B: R.63, K.64, Q.66 Ligand excluded by PLIP EDO.5: 3 residues within 4Å: Chain B: E.184, Y.185, D.186 Ligand excluded by PLIP EDO.6: 3 residues within 4Å: Chain B: K.104, E.105, V.461 Ligand excluded by PLIP EDO.7: 4 residues within 4Å: Chain B: L.343, G.344, F.390, R.435 Ligand excluded by PLIP EDO.8: 3 residues within 4Å: Chain B: M.85, K.86, S.89 Ligand excluded by PLIP EDO.9: 10 residues within 4Å: Chain B: S.319, N.320, A.321, D.337, R.338, V.339, L.469, G.472, E.473, I.476 Ligand excluded by PLIP EDO.10: 4 residues within 4Å: Chain B: T.317, H.336, R.338, H.373 Ligand excluded by PLIP EDO.11: 5 residues within 4Å: Chain B: I.27, Q.66, Y.223, S.240, F.241 Ligand excluded by PLIP EDO.12: 7 residues within 4Å: Chain B: H.400, R.409, T.412, L.413, F.418, P.419, V.420 Ligand excluded by PLIP EDO.13: 2 residues within 4Å: Chain B: W.124, R.296 Ligand excluded by PLIP EDO.14: 4 residues within 4Å: Chain B: R.77, G.107, F.108 Ligands: SAH.2 Ligand excluded by PLIP EDO.15: 4 residues within 4Å: Chain B: W.49, Q.200, S.201, F.209 Ligand excluded by PLIP EDO.16: 4 residues within 4Å: Chain B: F.370, A.371, S.380, Q.382 Ligand excluded by PLIP EDO.17: 6 residues within 4Å: Chain B: D.207, A.321, E.322, I.325, H.326, K.340 Ligand excluded by PLIP

1 x SAH: S-ADENOSYL-L-HOMOCYSTEINE(Non-covalent)

SAH.2: 17 residues within 4Å: Chain B: R.77, E.105, E.106, F.108, P.182, T.255, R.256, D.277, M.278, C.279, N.280, H.281, Y.315, S.327, F.329, F.331 Ligands: EDO.14 16 PLIP interactions: 16 interactions with chain B Hydrogen bonds: B:F.108, B:F.108, B:N.280, B:H.281, B:H.281, B:Y.315 Water bridges: B:E.106, B:E.106, B:D.186, B:T.255, B:S.327, B:G.328 Salt bridges: B:R.77, B:R.256 pi-Stacking: B:F.329, B:F.329

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dai, S. et al., An engineered variant of SETD3 methyltransferase alters target specificity from histidine to lysine methylation. J.Biol.Chem. (2020)

Release Date

2020-01-22

Peptides

Actin, cytoplasmic 1: A
Actin-histidine N-methyltransferase: B

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
Z

B
B

Actin, cytoplasmic 1

Actin-histidine N-methyltransferase

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