SMTL ID : 6v66.2 (1 other biounit)

EGFR(T790M/V948R) in complex with LN2899

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.79 Å

Oligo State

homo-dimer

Ligands

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.1: 7 residues within 4Å: Chain A: G.26, A.27, F.28, G.29, K.50, R.146 Ligands: QP1.2 Ligand excluded by PLIP CL.4: 7 residues within 4Å: Chain B: G.26, A.27, F.28, G.29, K.50, D.160 Ligands: QP1.3 Ligand excluded by PLIP

2 x QP1: N-{3-[(4-{4-(4-fluorophenyl)-2-[(2-methoxyethyl)sulfanyl]-1H-imidazol-5-yl}pyridin-2-yl)amino]-4-methoxyphenyl}propanamide(Covalent)

QP1.2: 25 residues within 4Å: Chain A: L.23, G.24, S.25, G.26, G.29, V.31, A.48, K.50, L.82, L.93, I.94, M.95, Q.96, L.97, M.98, P.99, G.101, C.102, D.105, R.146, N.147, L.149, T.159, D.160 Ligands: CL.1 11 PLIP interactions: 11 interactions with chain A Hydrophobic interactions: A:L.23, A:V.31, A:A.48, A:K.50, A:M.95, A:L.149 Hydrogen bonds: A:M.98, A:M.98, A:C.102, A:D.105, A:R.146 QP1.3: 24 residues within 4Å: Chain B: L.23, G.24, S.25, G.26, V.31, A.48, K.50, L.82, L.93, I.94, M.95, Q.96, L.97, M.98, P.99, G.101, C.102, D.105, R.146, N.147, L.149, T.159, D.160 Ligands: CL.4 13 PLIP interactions: 13 interactions with chain B Hydrophobic interactions: B:L.23, B:V.31, B:K.50, B:K.50, B:M.95, B:L.149 Hydrogen bonds: B:M.98, B:M.98, B:C.102, B:T.159 Water bridges: B:L.23, B:D.105, B:D.105

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Heppner, D.E. et al., Structural Basis for EGFR Mutant Inhibition by Trisubstituted Imidazole Inhibitors. J.Med.Chem. (2020)

Release Date

2020-04-22

Peptides

Epidermal growth factor receptor: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
C

Epidermal growth factor receptor

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