SMTL ID : 6v6m.1

Crystal structure of an inactive state of GMPPNP-bound RhoA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.39 Å

Oligo State

monomer

Ligands

1 x GNP: PHOSPHOAMINOPHOSPHONIC ACID-GUANYLATE ESTER(Non-covalent)

GNP.1: 21 residues within 4Å: Chain A: D.15, G.16, A.17, C.18, G.19, K.20, T.21, C.22, Y.36, P.38, A.63, G.64, K.120, D.122, L.123, S.162, A.163, K.164 Ligands: MG.2, DIO.3, DIO.4 22 PLIP interactions: 22 interactions with chain A Hydrogen bonds: A:A.17, A:C.18, A:G.19, A:K.20, A:K.20, A:T.21, A:T.21, A:C.22, A:G.64, A:K.120, A:K.120, A:A.163, A:K.164 Water bridges: A:T.21, A:T.21, A:L.23, A:Y.36, A:Y.36, A:Y.36, A:P.38, A:Q.65 Salt bridges: A:D.122

1 x MG: MAGNESIUM ION(Non-covalent)

MG.2: 3 residues within 4Å: Chain A: T.21, P.38 Ligands: GNP.1 4 PLIP interactions: 2 interactions with chain A, 2 Ligand-Water interactions Metal complexes: A:T.21, A:P.38, H2O.2, H2O.3

2 x DIO: 1,4-DIETHYLENE DIOXIDE(Non-covalent)

DIO.3: 7 residues within 4Å: Chain A: T.21, C.22, I.25, V.35, Y.36, V.37 Ligands: GNP.1 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:V.37 DIO.4: 4 residues within 4Å: Chain A: C.22, A.163, K.164 Ligands: GNP.1 No protein-ligand interaction detected (PLIP)

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Lin, Y. et al., Structure of an inactive conformation of GTP-bound RhoA GTPase. Structure (2021)

Release Date

2020-12-09

Peptides

Transforming protein RhoA: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Transforming protein RhoA

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