SMTL ID : 6v73.1

Crystal Structure of Metallo Beta Lactamase from Erythrobacter litoralis with beta mercaptoethanol in the active site

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

4 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: H.96, H.98, H.165, C.184 Ligands: ZN.2, BME.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:H.96, A:H.98, A:H.165 ZN.2: 5 residues within 4Å: Chain A: D.100, C.184, H.226 Ligands: ZN.1, BME.4 3 PLIP interactions: 3 interactions with chain A Metal complexes: A:D.100, A:C.184, A:H.226 ZN.6: 6 residues within 4Å: Chain B: H.96, H.98, H.165, C.184 Ligands: ZN.7, BME.9 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:H.96, B:H.98, B:H.165 ZN.7: 5 residues within 4Å: Chain B: D.100, C.184, H.226 Ligands: ZN.6, BME.9 3 PLIP interactions: 3 interactions with chain B Metal complexes: B:D.100, B:C.184, B:H.226

2 x CL: CHLORIDE ION(Non-functional Binders)

CL.3: 4 residues within 4Å: Chain A: F.216, P.217, D.218, A.219 Ligand excluded by PLIP CL.8: 4 residues within 4Å: Chain B: F.216, P.217, D.218, A.219 Ligand excluded by PLIP

2 x BME: BETA-MERCAPTOETHANOL(Non-functional Binders)

BME.4: 10 residues within 4Å: Chain A: L.43, H.96, H.98, D.100, H.165, C.184, N.196, H.226 Ligands: ZN.1, ZN.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.196 BME.9: 10 residues within 4Å: Chain B: L.43, H.96, H.98, D.100, H.165, C.184, N.196, H.226 Ligands: ZN.6, ZN.7 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:N.196

2 x FMT: FORMIC ACID(Non-functional Binders)

FMT.5: 5 residues within 4Å: Chain A: F.46, I.49 Chain B: F.46, I.49 Ligands: FMT.10 1 PLIP interactions: 1 interactions with chain A Water bridges: A:G.47 FMT.10: 5 residues within 4Å: Chain A: F.46, I.49 Chain B: F.46, I.49 Ligands: FMT.5 1 PLIP interactions: 1 interactions with chain B Water bridges: B:G.47

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Maltseva, N. et al., Crystal Structure of Metallo Beta Lactamase from Erythrobacter litoralis with beta mercaptoethanol in the active site. To Be Published

Release Date

2019-12-25

Peptides

Beta-lactamase II: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Beta-lactamase II

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