SMTL ID : 6v81.1

The crystal structure of the outer-membrane transporter YncD

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.96 Å

Oligo State

monomer

Ligands

1 x BOG: octyl beta-D-glucopyranoside(Non-covalent)

BOG.1: 4 residues within 4Å: Chain A: I.336, Y.358, W.395, I.397 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.336, A:Y.358, A:Y.358, A:I.397

1 x CA: CALCIUM ION(Non-covalent)

CA.2: 5 residues within 4Å: Chain A: D.428, Y.430, N.435, G.436, D.438 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:D.428, A:D.428, A:Y.430, A:G.436, A:D.438

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Grinter, R. et al., The crystal structure of the TonB-dependent transporter YncD reveals a positively charged substrate-binding site. Acta Crystallogr D Struct Biol (2020)

Release Date

2020-05-06

Peptides

Probable TonB-dependent receptor YncD: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
Show / Hide

Probable TonB-dependent receptor YncD