SMTL ID : 6v8f.1

Crystal structure of recombinat mutant Q185R of human fumarase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.30 Å

Oligo State

homo-tetramer

Ligands

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.1: 3 residues within 4Å: Chain A: R.377 Chain C: G.39, V.40 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain C Water bridges: A:R.377 Salt bridges: A:R.377 Hydrogen bonds: C:V.40 SO4.2: 1 residues within 4Å: Chain A: K.219 2 PLIP interactions: 2 interactions with chain A Water bridges: A:K.219 Salt bridges: A:K.219 SO4.7: 3 residues within 4Å: Chain A: G.39, V.40 Chain C: R.377 3 PLIP interactions: 2 interactions with chain C, 1 interactions with chain A Water bridges: C:R.377 Salt bridges: C:R.377 Hydrogen bonds: A:V.40 SO4.8: 1 residues within 4Å: Chain C: K.219 2 PLIP interactions: 2 interactions with chain C Water bridges: C:K.219 Salt bridges: C:K.219

4 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 2 residues within 4Å: Chain A: K.128, H.132 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:K.128 GOL.5: 3 residues within 4Å: Chain B: R.377 Chain D: G.39, V.40 6 PLIP interactions: 2 interactions with chain D, 4 interactions with chain B Hydrogen bonds: D:V.40, B:T.46, B:R.377, B:R.377 Water bridges: D:T.41, B:T.46 GOL.9: 2 residues within 4Å: Chain C: K.128, H.132 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:K.128 GOL.11: 3 residues within 4Å: Chain B: G.39, V.40 Chain D: R.377 6 PLIP interactions: 2 interactions with chain B, 4 interactions with chain D Hydrogen bonds: B:V.40, D:T.46, D:T.46, D:R.377, D:R.377 Water bridges: B:T.41

4 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 3 residues within 4Å: Chain A: K.56, A.59, S.140 Ligand excluded by PLIP CL.6: 2 residues within 4Å: Chain B: K.56, S.140 Ligand excluded by PLIP CL.10: 3 residues within 4Å: Chain C: K.56, A.59, S.140 Ligand excluded by PLIP CL.12: 2 residues within 4Å: Chain D: K.56, S.140 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ajalla, M.A.A. et al., Crystal structure of recombinat mutant Q185R of human fumarase. To Be Published

Release Date

2020-12-16

Peptides

Fumarate hydratase, mitochondrial: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Fumarate hydratase, mitochondrial