SMTL ID : 6v9s.1

Structure-based development of subtype-selective orexin 1 receptor antagonists

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.50 Å

Oligo State

monomer

Ligands

1 x JHC: [(2S)-2-[(2S)-butan-2-yl]-4-(5-chloro-1,3-benzoxazol-2-yl)-1,4-diazepan-1-yl][5-methyl-2-(2H-1,2,3-triazol-2-yl)phenyl]methanone(Non-covalent)

JHC.1: 13 residues within 4Å: Chain A: A.110, S.111, W.120, I.130, P.131, Q.134, A.135, V.138, Q.187, E.212, I.477, N.481, Y.511 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:I.130, A:A.135, A:V.138 Hydrogen bonds: A:N.481

1 x CLR: CHOLESTEROL(Non-covalent)

CLR.2: 5 residues within 4Å: Chain A: L.69, V.70, L.74, L.77, A.535 2 PLIP interactions: 2 interactions with chain A Hydrophobic interactions: A:V.70, A:L.74

1 x OLA: OLEIC ACID(Non-covalent)

OLA.3: 6 residues within 4Å: Chain A: A.240, F.244, F.247, R.248, W.251, M.464 4 PLIP interactions: 4 interactions with chain A Hydrophobic interactions: A:F.244, A:F.247, A:R.248, A:W.251

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Hellmann, J. et al., Structure-based development of a subtype-selective orexin 1 receptor antagonist. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2020-07-15

Peptides

Orexin receptor type 1,GlgA glycogen synthase chimera: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Membrane

We predict this structure to be a membrane protein.
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Orexin receptor type 1,GlgA glycogen synthase chimera