SMTL ID : 6va8.1

Crystal structure of glucose-6-phosphate dehydrogenase F381L mutant in complex with catalytic NADP+

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 3.95 Å

Oligo State

homo-dimer

Ligands

2 x NAP: NADP NICOTINAMIDE-ADENINE-DINUCLEOTIDE PHOSPHATE(Non-covalent)

NAP.1: 19 residues within 4Å: Chain A: S.40, G.41, D.42, L.43, A.71, R.72, S.73, Y.112, A.141, L.142, P.143, P.144, V.146, E.170, K.171, P.172, Y.202, Y.249, F.253 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:Y.249 Hydrogen bonds: A:S.40, A:S.40, A:S.40, A:D.42, A:L.43, A:R.72, A:S.73, A:Y.112, A:L.142, A:Y.249 Salt bridges: A:R.72 pi-Stacking: A:Y.202 NAP.2: 19 residues within 4Å: Chain B: S.40, G.41, D.42, L.43, A.71, R.72, S.73, Y.112, A.141, L.142, P.143, P.144, V.146, E.170, K.171, P.172, Y.202, Y.249, F.253 15 PLIP interactions: 15 interactions with chain B Hydrophobic interactions: B:Y.249 Hydrogen bonds: B:S.40, B:S.40, B:S.40, B:D.42, B:L.43, B:R.72, B:S.73, B:Y.112, B:Y.112, B:L.142, B:Y.202, B:Y.249 Salt bridges: B:R.72 pi-Stacking: B:Y.202

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Horikoshi, N. et al., Long-range structural defects by pathogenic mutations in most severe glucose-6-phosphate dehydrogenase deficiency. Proc.Natl.Acad.Sci.USA (2021)

Release Date

2021-01-27

Peptides

Glucose-6-phosphate 1-dehydrogenase: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

Glucose-6-phosphate 1-dehydrogenase