SMTL ID : 6vag.1

Crystal structure of the oligomerization domain of phosphoprotein from parainfluenza virus 5

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 1.40 Å

Oligo State

homo-tetramer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 2 residues within 4Å: Chain A: E.50, N.53 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:N.53 GOL.2: 4 residues within 4Å: Chain A: A.45, N.49 Chain B: S.43, N.47 3 PLIP interactions: 2 interactions with chain A, 1 interactions with chain B Hydrogen bonds: A:N.49, A:N.49 Water bridges: B:N.47 GOL.3: 2 residues within 4Å: Chain B: G.32, N.35 3 PLIP interactions: 3 interactions with chain B Hydrogen bonds: B:N.35, B:N.35 Water bridges: B:G.32 GOL.4: 2 residues within 4Å: Chain C: E.50, N.53 1 PLIP interactions: 1 interactions with chain C Hydrogen bonds: C:N.53 GOL.5: 4 residues within 4Å: Chain C: A.45, N.49 Chain D: S.43, N.47 3 PLIP interactions: 1 interactions with chain D, 2 interactions with chain C Water bridges: D:N.47 Hydrogen bonds: C:N.49, C:N.49 GOL.6: 2 residues within 4Å: Chain D: G.32, N.35 3 PLIP interactions: 3 interactions with chain D Hydrogen bonds: D:N.35, D:N.35 Water bridges: D:G.32

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Abdella, R. et al., Structure of a paramyxovirus polymerase complex reveals a unique methyltransferase-CTD conformation. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2020-02-19

Peptides

Phosphoprotein: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Phosphoprotein