SMTL ID : 6vba.1

Structure of human Uracil DNA Glycosylase (UDG) bound to Aurintricarboxylic acid (ATA)

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.80 Å

Oligo State

monomer

Ligands

1 x QU4: 3,3'-[(3-carboxy-4-oxocyclohexa-2,5-dien-1-ylidene)methylene]bis(6-hydroxybenzoic acid)(Non-covalent)

QU4.1: 13 residues within 4Å: Chain A: G.62, Q.63, D.64, Y.66, H.67, Q.71, C.76, F.77, P.86, P.87, N.123, S.189, L.191 14 PLIP interactions: 14 interactions with chain A Hydrophobic interactions: A:Q.63, A:Y.66 Hydrogen bonds: A:Q.63, A:D.64, A:H.67, A:Q.71, A:F.77, A:N.123, A:S.189, A:S.189 Water bridges: A:Y.66 Salt bridges: A:H.187 pi-Stacking: A:Y.66 pi-Cation interactions: A:H.187

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Nguyen, M.T. et al., An effective human uracil-DNA glycosylase inhibitor targets the open pre-catalytic active site conformation. Prog.Biophys.Mol.Biol. (2021)

Release Date

2021-03-03

Peptides

Uracil-DNA glycosylase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Uracil-DNA glycosylase

Related Entries With Identical Sequence