SMTL ID : 6vbb.1

2.60 Angstrom Resolution Crystal Structure of Peptidase S41 from Acinetobacter baumannii

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.60 Å

Oligo State

homo-dimer

Ligands

1 x TMO: trimethylamine oxide(Non-covalent)

TMO.1: 3 residues within 4Å: Chain A: P.349, N.350, T.352 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:P.349, A:T.352

2 x PEG: DI(HYDROXYETHYL)ETHER(Non-functional Binders)

PEG.2: 3 residues within 4Å: Chain A: P.170, I.171, S.172 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:S.172 Water bridges: A:S.172 PEG.5: 5 residues within 4Å: Chain B: Q.348, P.349, N.350, Q.351, T.352 1 PLIP interactions: 1 interactions with chain B Hydrogen bonds: B:T.352

2 x NA: SODIUM ION(Non-functional Binders)

NA.3: 3 residues within 4Å: Chain A: D.243, L.246, L.267 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:D.243, A:L.267 NA.6: 3 residues within 4Å: Chain B: D.243, L.246, L.267 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:L.246, B:L.267

3 x CL: CHLORIDE ION(Non-functional Binders)

CL.4: 2 residues within 4Å: Chain A: I.87, Q.88 Ligand excluded by PLIP CL.7: 1 residues within 4Å: Chain B: P.32 Ligand excluded by PLIP CL.8: 2 residues within 4Å: Chain A: P.32 Chain B: D.56 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Minasov, G. et al., 2.60 Angstrom Resolution Crystal Structure of Peptidase S41 from Acinetobacter baumannii. To Be Published

Release Date

2019-12-25

Peptides

Peptidase S41: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

Peptidase S41