SMTL ID : 6vbe.1

Crystal structure of recombinant mutant H180R of human fumarase

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.90 Å

Oligo State

homo-tetramer

Ligands

6 x GOL: GLYCEROL(Non-functional Binders)

GOL.1: 7 residues within 4Å: Chain A: P.45, P.47, K.370, L.373, H.374, R.377 Chain C: T.41 6 PLIP interactions: 5 interactions with chain A, 1 interactions with chain C Water bridges: A:T.46, A:T.46, A:E.158, A:E.158, A:K.370, C:E.42 GOL.2: 7 residues within 4Å: Chain A: T.190, H.191, A.195 Chain B: N.144, A.234 Chain D: K.327, N.329 7 PLIP interactions: 2 interactions with chain D, 2 interactions with chain B, 3 interactions with chain A Hydrogen bonds: D:K.327, D:N.329, B:N.144, A:H.191 Water bridges: B:S.143, A:T.190, A:T.190 GOL.3: 7 residues within 4Å: Chain B: P.45, P.47, K.370, L.373, H.374, R.377 Chain D: T.41 5 PLIP interactions: 4 interactions with chain B, 1 interactions with chain D Hydrogen bonds: B:K.370 Water bridges: B:T.46, B:K.370, B:R.377, D:E.42 GOL.5: 7 residues within 4Å: Chain A: T.41 Chain C: P.45, P.47, K.370, L.373, H.374, R.377 6 PLIP interactions: 5 interactions with chain C, 1 interactions with chain A Water bridges: C:T.46, C:T.46, C:E.158, C:E.158, C:K.370 Hydrogen bonds: A:T.41 GOL.6: 7 residues within 4Å: Chain B: K.327, N.329 Chain C: T.190, H.191, A.195 Chain D: N.144, A.234 6 PLIP interactions: 2 interactions with chain B, 2 interactions with chain D, 2 interactions with chain C Hydrogen bonds: B:K.327, B:N.329, D:N.144, C:T.190, C:H.191 Water bridges: D:S.143 GOL.7: 7 residues within 4Å: Chain B: T.41 Chain D: P.45, P.47, K.370, L.373, H.374, R.377 5 PLIP interactions: 4 interactions with chain D, 1 interactions with chain B Hydrogen bonds: D:K.370, B:T.41 Water bridges: D:T.46, D:K.370, D:R.377

2 x TLA: L(+)-TARTARIC ACID(Non-covalent)

TLA.4: 9 residues within 4Å: Chain A: T.103, S.143, N.144, A.234 Chain B: T.190, H.191, A.195 Chain C: K.327, N.329 13 PLIP interactions: 4 interactions with chain B, 5 interactions with chain A, 4 interactions with chain C Hydrogen bonds: B:T.190, A:T.103, A:N.144, C:N.329 Water bridges: B:T.190, B:T.190, A:S.101, A:S.101, A:S.142, C:K.327, C:K.327 Salt bridges: B:H.191, C:K.327 TLA.8: 9 residues within 4Å: Chain A: K.327, N.329 Chain C: T.103, S.143, N.144, A.234 Chain D: T.190, H.191, A.195 13 PLIP interactions: 6 interactions with chain A, 3 interactions with chain D, 4 interactions with chain C Hydrogen bonds: A:N.329, D:T.190, D:T.190, C:N.144 Water bridges: A:K.327, A:K.327, A:K.327, A:N.329, C:S.101, C:S.101, C:S.142 Salt bridges: A:K.327, D:H.191

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Ajalla, M.A.A. et al., Crystal structure of recombinant mutant H180R of human fumarase. To Be Published

Release Date

2020-12-23

Peptides

Fumarate hydratase, mitochondrial: ABCD

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

C
A

D
B

Fumarate hydratase, mitochondrial