SMTL ID : 6vch.2 (5 other biounits)

Crystal structure of Nitrosotalea devanaterra carotenoid cleavage dioxygenase in complex with 3-hydroxy-beta-apo-14'-carotenal

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 2.35 Å

Oligo State

monomer

Ligands

1 x CO: COBALT (II) ION(Non-covalent)

CO.1: 5 residues within 4Å: Chain A: H.172, H.222, H.289, H.467 Ligands: QVM.3 5 PLIP interactions: 4 interactions with chain A, 1 Ligand-Water interactions Metal complexes: A:H.172, A:H.222, A:H.289, A:H.467, H2O.1

1 x NA: SODIUM ION(Non-functional Binders)

NA.2: 4 residues within 4Å: Chain A: E.354, S.378, T.379, Q.388 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.354, A:T.379

1 x QVM: (2E,4E,6E,8E,10E)-11-[(4R)-4-hydroxy-2,6,6-trimethylcyclohex-1-en-1-yl]-5,9-dimethylundeca-2,4,6,8,10-pentaenal(Non-covalent)

QVM.3: 17 residues within 4Å: Chain A: F.58, R.98, E.99, F.100, F.120, T.121, N.125, V.126, T.139, E.140, T.141, G.167, Y.220, H.222, L.245, F.252 Ligands: CO.1 13 PLIP interactions: 13 interactions with chain A Hydrophobic interactions: A:F.58, A:F.100, A:F.100, A:F.120, A:F.120, A:T.121, A:V.126, A:E.140, A:E.140, A:T.141, A:L.245, A:F.252, A:F.252

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Daruwalla, A. et al., Structural basis for carotenoid cleavage by an archaeal carotenoid dioxygenase. Proc.Natl.Acad.Sci.USA (2020)

Release Date

2020-07-08

Peptides

carotenoid cleavage dioxygenase: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
B

carotenoid cleavage dioxygenase

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