SMTL ID : 6vcs.1

SRA domain of UHRF1 in complex with DNA

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.70 Å

Oligo State

homo-trimer

Ligands

1 x UNK- UNK- UNK- UNK- UNK- UNK: UNK-UNK-UNK-UNK(Non-covalent)

UNK-UNK-UNK-UNK-UNK-UNK.1: 6 residues within 4Å: Chain B: V.34 Chain C: G.1 Chain E: P.103, I.104, N.105, Q.107 4 PLIP interactions: 4 interactions with chain E Hydrogen bonds: E:I.104, E:I.104, E:N.105, E:Q.107

66 x UNX: UNKNOWN ATOM OR ION(Non-functional Binders)

UNX.2: 7 residues within 4Å: Chain A: P.8, V.14, Y.143, G.145, I.146, D.172, E.174 Ligand excluded by PLIP UNX.3: 2 residues within 4Å: Chain A: D.171, D.173 Ligand excluded by PLIP UNX.4: 1 residues within 4Å: Chain A: P.2 Ligand excluded by PLIP UNX.5: 4 residues within 4Å: Chain A: V.49, L.50, A.51, G.52 Ligand excluded by PLIP UNX.6: 2 residues within 4Å: Chain A: A.110, E.111 Ligand excluded by PLIP UNX.7: 3 residues within 4Å: Chain A: F.63, L.167, R.169 Ligand excluded by PLIP UNX.8: 5 residues within 4Å: Chain A: G.190, L.191, T.192, Q.194 Ligands: UNX.28 Ligand excluded by PLIP UNX.9: 4 residues within 4Å: Chain A: G.11, P.13, T.16 Ligands: UNX.28 Ligand excluded by PLIP UNX.10: 3 residues within 4Å: Chain A: L.98, C.100, A.102 Ligand excluded by PLIP UNX.11: 2 residues within 4Å: Chain A: W.153 Ligands: UNX.12 Ligand excluded by PLIP UNX.12: 3 residues within 4Å: Chain A: K.151, W.153 Ligands: UNX.11 Ligand excluded by PLIP UNX.13: 5 residues within 4Å: Chain A: F.20, R.21 Chain E: E.26 Ligands: UNX.17, UNX.18 Ligand excluded by PLIP UNX.14: 4 residues within 4Å: Chain A: D.56, V.58, T.65, R.165 Ligand excluded by PLIP UNX.15: 2 residues within 4Å: Chain A: D.86, Q.87 Ligand excluded by PLIP UNX.16: 3 residues within 4Å: Chain A: D.57, Y.66, T.67 Ligand excluded by PLIP UNX.17: 5 residues within 4Å: Chain A: R.19, R.21, N.126, N.141 Ligands: UNX.13 Ligand excluded by PLIP UNX.18: 6 residues within 4Å: Chain A: F.20, R.21, V.22 Chain E: V.22, E.26 Ligands: UNX.13 Ligand excluded by PLIP UNX.19: 2 residues within 4Å: Chain A: H.38 Chain D: C.2 Ligand excluded by PLIP UNX.20: 3 residues within 4Å: Chain A: E.111, A.112, K.113 Ligand excluded by PLIP UNX.21: 3 residues within 4Å: Chain A: L.50, D.59, S.133 Ligand excluded by PLIP UNX.22: 3 residues within 4Å: Chain A: R.170, D.171, D.172 Ligand excluded by PLIP UNX.23: 1 residues within 4Å: Ligands: UNX.24 Ligand excluded by PLIP UNX.24: 3 residues within 4Å: Chain A: E.139, M.193 Ligands: UNX.23 Ligand excluded by PLIP UNX.25: 3 residues within 4Å: Chain A: S.41, T.90, N.91 Ligand excluded by PLIP UNX.26: 4 residues within 4Å: Chain A: K.88, L.89, D.106 Ligands: UNX.29 Ligand excluded by PLIP UNX.27: 2 residues within 4Å: Chain A: E.26 Chain C: C.12 Ligand excluded by PLIP UNX.28: 4 residues within 4Å: Chain A: T.16, Q.194 Ligands: UNX.8, UNX.9 Ligand excluded by PLIP UNX.29: 3 residues within 4Å: Chain A: K.88, T.90 Ligands: UNX.26 Ligand excluded by PLIP UNX.30: 2 residues within 4Å: Chain A: D.172, D.173 Ligand excluded by PLIP UNX.31: 0 residues within 4Å: (No contacts) Ligand excluded by PLIP UNX.32: 3 residues within 4Å: Chain B: V.127, G.130, P.137 Ligand excluded by PLIP UNX.33: 4 residues within 4Å: Chain B: Y.135, A.136, P.137, R.142 Ligand excluded by PLIP UNX.34: 2 residues within 4Å: Chain B: K.151, W.153 Ligand excluded by PLIP UNX.35: 2 residues within 4Å: Chain B: D.172, D.173 Ligand excluded by PLIP UNX.36: 2 residues within 4Å: Chain B: F.20, R.21 Ligand excluded by PLIP UNX.37: 5 residues within 4Å: Chain B: S.69, T.90, N.91, T.92, N.93 Ligand excluded by PLIP UNX.38: 3 residues within 4Å: Chain B: D.114, W.115, R.116 Ligand excluded by PLIP UNX.39: 3 residues within 4Å: Chain B: P.2, H.5, R.31 Ligand excluded by PLIP UNX.40: 4 residues within 4Å: Chain B: L.50, A.51, G.52 Ligands: UNX.41 Ligand excluded by PLIP UNX.41: 2 residues within 4Å: Chain B: L.50 Ligands: UNX.40 Ligand excluded by PLIP UNX.42: 3 residues within 4Å: Chain B: K.88, L.89, D.106 Ligand excluded by PLIP UNX.43: 3 residues within 4Å: Chain B: N.126, V.127, K.128 Ligand excluded by PLIP UNX.44: 2 residues within 4Å: Chain B: Q.87, K.88 Ligand excluded by PLIP UNX.45: 3 residues within 4Å: Chain B: N.62, F.63, R.169 Ligand excluded by PLIP UNX.46: 2 residues within 4Å: Chain B: H.38 Chain C: C.2 Ligand excluded by PLIP UNX.47: 4 residues within 4Å: Chain B: R.170, P.175, G.176, T.179 Ligand excluded by PLIP UNX.48: 4 residues within 4Å: Chain B: D.59, S.133, K.134, Y.135 Ligand excluded by PLIP UNX.49: 3 residues within 4Å: Chain B: W.18, S.27, Q.194 Ligand excluded by PLIP UNX.50: 4 residues within 4Å: Chain B: S.25, E.26, H.33 Chain C: C.2 Ligand excluded by PLIP UNX.51: 3 residues within 4Å: Chain B: T.179, K.180, E.181 Ligand excluded by PLIP UNX.52: 5 residues within 4Å: Chain B: I.37, Y.66, T.67, G.68, S.69 Ligand excluded by PLIP UNX.53: 2 residues within 4Å: Chain B: S.84, F.161 Ligand excluded by PLIP UNX.54: 2 residues within 4Å: Chain B: P.120, K.148 Ligand excluded by PLIP UNX.55: 2 residues within 4Å: Chain B: L.167, R.169 Ligand excluded by PLIP UNX.56: 2 residues within 4Å: Chain A: E.139 Chain E: E.197 Ligand excluded by PLIP UNX.57: 5 residues within 4Å: Chain E: F.20, R.21, V.22, H.33 Ligands: UNX.58 Ligand excluded by PLIP UNX.58: 4 residues within 4Å: Chain E: F.20, R.21 Ligands: UNX.57, UNX.65 Ligand excluded by PLIP UNX.59: 2 residues within 4Å: Chain E: P.8, D.172 Ligand excluded by PLIP UNX.60: 3 residues within 4Å: Chain E: V.49, A.51, G.52 Ligand excluded by PLIP UNX.61: 5 residues within 4Å: Chain E: D.57, V.58, D.59, F.64, T.65 Ligand excluded by PLIP UNX.62: 6 residues within 4Å: Chain E: Y.6, G.7, Y.46, P.120, V.121, R.122 Ligand excluded by PLIP UNX.63: 3 residues within 4Å: Chain E: D.57, Y.66, T.67 Ligand excluded by PLIP UNX.64: 3 residues within 4Å: Chain E: N.126, V.127 Ligands: UNX.65 Ligand excluded by PLIP UNX.65: 6 residues within 4Å: Chain E: R.19, R.21, N.126, N.141 Ligands: UNX.58, UNX.64 Ligand excluded by PLIP UNX.66: 4 residues within 4Å: Chain E: R.19, V.127, E.139, G.140 Ligand excluded by PLIP UNX.67: 1 residues within 4Å: Chain E: R.142 Ligand excluded by PLIP

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Dong, C. et al., SRA domain of UHRF1 in complex with DNA. To Be Published

Release Date

2020-03-04

Peptides

E3 ubiquitin-protein ligase UHRF1: ABE

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
B

E
E

E3 ubiquitin-protein ligase UHRF1