- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.82 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 2 x MG: MAGNESIUM ION(Non-covalent)
MG.4: 4 residues within 4Å:- Chain A: D.20, K.256
- Ligands: SO4.1, SO4.2
4 PLIP interactions:1 interactions with chain A, 3 Ligand-Water interactions- Metal complexes: A:D.20, H2O.1, H2O.2, H2O.4
MG.17: 4 residues within 4Å:- Chain B: D.20, K.256
- Ligands: SO4.14, SO4.15
4 PLIP interactions:1 interactions with chain B, 3 Ligand-Water interactions- Metal complexes: B:D.20, H2O.14, H2O.16, H2O.17
- 2 x GOL: GLYCEROL(Non-functional Binders)
GOL.5: 6 residues within 4Å:- Chain A: F.7, F.9, N.181, W.265, R.304
- Chain B: D.324
5 PLIP interactions:2 interactions with chain B, 3 interactions with chain A- Hydrogen bonds: B:D.324, A:N.181, A:R.304, A:R.304
- Water bridges: B:D.324
GOL.18: 6 residues within 4Å:- Chain A: D.324
- Chain B: F.7, F.9, N.181, W.265, R.304
5 PLIP interactions:3 interactions with chain B, 2 interactions with chain A- Hydrogen bonds: B:N.181, B:R.304, B:R.304, A:D.324
- Water bridges: A:D.324
- 2 x MTA: 5'-DEOXY-5'-METHYLTHIOADENOSINE(Non-covalent)
MTA.6: 13 residues within 4Å:- Chain A: H.18, P.19, D.170, K.172, S.197, S.238, R.240, F.241, D.249
- Chain B: G.124, D.125, I.313
- Ligands: SO4.1
5 PLIP interactions:5 interactions with chain A- Hydrogen bonds: A:D.170, A:D.249
- Water bridges: A:S.238
- pi-Stacking: A:F.241, A:F.241
MTA.19: 13 residues within 4Å:- Chain A: G.124, D.125, I.313
- Chain B: H.18, P.19, D.170, K.172, S.197, S.238, R.240, F.241, D.249
- Ligands: SO4.14
5 PLIP interactions:5 interactions with chain B- Hydrogen bonds: B:D.170, B:D.249
- Water bridges: B:S.238
- pi-Stacking: B:F.241, B:F.241
- 14 x CL: CHLORIDE ION(Non-functional Binders)
CL.7: 1 residues within 4Å:- Chain A: R.376
Ligand excluded by PLIPCL.8: 3 residues within 4Å:- Chain A: R.240, V.242, I.243
Ligand excluded by PLIPCL.9: 4 residues within 4Å:- Chain A: F.344, D.345, N.354, K.387
Ligand excluded by PLIPCL.10: 4 residues within 4Å:- Chain A: G.124, D.125, K.280, V.281
Ligand excluded by PLIPCL.11: 4 residues within 4Å:- Chain A: R.73, C.93, K.94, V.95
Ligand excluded by PLIPCL.12: 3 residues within 4Å:- Chain A: R.168, D.201, E.202
Ligand excluded by PLIPCL.13: 2 residues within 4Å:- Chain A: P.104, D.105
Ligand excluded by PLIPCL.20: 1 residues within 4Å:- Chain B: R.376
Ligand excluded by PLIPCL.21: 3 residues within 4Å:- Chain B: R.240, V.242, I.243
Ligand excluded by PLIPCL.22: 4 residues within 4Å:- Chain B: F.344, D.345, N.354, K.387
Ligand excluded by PLIPCL.23: 4 residues within 4Å:- Chain B: G.124, D.125, K.280, V.281
Ligand excluded by PLIPCL.24: 4 residues within 4Å:- Chain B: R.73, C.93, K.94, V.95
Ligand excluded by PLIPCL.25: 3 residues within 4Å:- Chain B: R.168, D.201, E.202
Ligand excluded by PLIPCL.26: 2 residues within 4Å:- Chain B: P.104, D.105
Ligand excluded by PLIP- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sekula, B. et al., S-adenosylmethionine synthases in plants: Structural characterization of type I and II isoenzymes from Arabidopsis thaliana and Medicago truncatula. Int.J.Biol.Macromol. (2020)
- Release Date
- 2020-02-26
- Peptides
- S-adenosylmethionine synthase 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A
- Coordinates
- PDB Format
- Method
- X-RAY DIFFRACTION 1.82 Å
- Oligo State
- homo-dimer
- Ligands
- 6 x SO4: SULFATE ION(Non-functional Binders)
- 2 x MG: MAGNESIUM ION(Non-covalent)
- 2 x GOL: GLYCEROL(Non-functional Binders)
- 2 x MTA: 5'-DEOXY-5'-METHYLTHIOADENOSINE(Non-covalent)
- 14 x CL: CHLORIDE ION(Non-functional Binders)
- Links
- RCSB PDBe PDBe-KB PDBj PDBsum CATH PLIP
- Citation
- Sekula, B. et al., S-adenosylmethionine synthases in plants: Structural characterization of type I and II isoenzymes from Arabidopsis thaliana and Medicago truncatula. Int.J.Biol.Macromol. (2020)
- Release Date
- 2020-02-26
- Peptides
- S-adenosylmethionine synthase 1: AB
- SMTL:PDB
- SMTL Chain Id:
PDB Chain Id:A
AB
A