SMTL ID : 6vda.1

Metal-bound C-terminal domain of CzcD transporter from Thermotoga maritima

Coordinates

PDB Format

Method

X-RAY DIFFRACTION 2.40 Å

Oligo State

homo-dimer

Ligands

2 x ZN: ZINC ION(Non-covalent)

ZN.1: 4 residues within 4Å: Chain A: H.29, D.45, E.83, E.89 5 PLIP interactions: 5 interactions with chain A Metal complexes: A:H.29, A:D.45, A:E.83, A:E.89, A:E.89 ZN.4: 4 residues within 4Å: Chain B: H.29, D.45, E.83, E.89 5 PLIP interactions: 5 interactions with chain B Metal complexes: B:H.29, B:D.45, B:E.83, B:E.89, B:E.89

4 x SO4: SULFATE ION(Non-functional Binders)

SO4.2: 2 residues within 4Å: Chain A: H.26, N.27 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:N.27 Salt bridges: A:H.26 SO4.3: 6 residues within 4Å: Chain A: H.81, V.82 Chain B: I.80, H.81, V.82 Ligands: SO4.6 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:V.82, A:V.82 SO4.5: 2 residues within 4Å: Chain B: H.26, N.27 2 PLIP interactions: 2 interactions with chain B Hydrogen bonds: B:N.27 Salt bridges: B:H.26 SO4.6: 6 residues within 4Å: Chain A: I.80, H.81, V.82 Chain B: H.81, V.82 Ligands: SO4.3 2 PLIP interactions: 1 interactions with chain B, 1 interactions with chain A Hydrogen bonds: B:V.82, A:V.82

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Udagedara, S.R. et al., Structural and functional characterizations of the C-terminal domains of CzcD proteins. J.Inorg.Biochem. (2020)

Release Date

2020-06-24

Peptides

ZT_dimer domain-containing protein: AB

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

B
A

ZT_dimer domain-containing protein