SMTL ID : 6vdl.1

HCV NS3/4A protease A156T mutant in complex with glecaprevir

Coordinates

PDB Format Compare

Method

X-RAY DIFFRACTION 1.95 Å

Oligo State

monomer

Ligands

1 x ZN: ZINC ION(Non-covalent)

ZN.1: 6 residues within 4Å: Chain A: C.118, T.119, C.120, C.166, A.168, H.170 4 PLIP interactions: 4 interactions with chain A Metal complexes: A:C.118, A:C.120, A:C.166, A:H.170

1 x O31: Glecaprevir(Non-covalent)

O31.2: 23 residues within 4Å: Chain A: Q.62, T.63, F.64, V.76, Y.77, H.78, G.79, V.99, D.102, I.153, L.156, K.157, G.158, S.159, S.160, F.175, R.176, T.177, A.178, V.179, C.180, D.189 Ligands: SO4.5 17 PLIP interactions: 17 interactions with chain A Hydrophobic interactions: A:Q.62, A:F.64, A:Y.77, A:H.78, A:V.99, A:I.153, A:F.175, A:T.177, A:A.178 Hydrogen bonds: A:H.78, A:G.158, A:S.159, A:S.160, A:S.160, A:R.176, A:A.178, A:A.178

2 x GOL: GLYCEROL(Non-functional Binders)

GOL.3: 6 residues within 4Å: Chain A: L.21, S.22, E.53, L.115, L.165, G.169 2 PLIP interactions: 2 interactions with chain A Hydrogen bonds: A:E.53, A:G.169 GOL.4: 4 residues within 4Å: Chain A: K.10, T.61, Q.62, R.83 7 PLIP interactions: 7 interactions with chain A Hydrogen bonds: A:K.10, A:T.61, A:T.61, A:R.83, A:R.83 Water bridges: A:T.59, A:Q.62

2 x SO4: SULFATE ION(Non-functional Binders)

SO4.5: 3 residues within 4Å: Chain A: Y.77, G.81 Ligands: O31.2 1 PLIP interactions: 1 interactions with chain A Hydrogen bonds: A:Y.77 SO4.6: 2 residues within 4Å: Chain A: R.130, H.131 5 PLIP interactions: 5 interactions with chain A Water bridges: A:R.130, A:H.131, A:H.131 Salt bridges: A:R.130, A:H.131

Links

RCSB   PDBe   PDBe-KB   PDBj   PDBsum   CATH   PLIP

Citation

Timm, J. et al., RAS at position 156 of HCV NS3/4A protease abolish inhibition by current HCV drugs. To Be Published

Release Date

2020-12-30

Peptides

Non-structural protein 4A, Serine protease NS3: A

SMTL:PDB

SMTL Chain Id:
PDB Chain Id:

A
A

Non-structural protein 4A, Serine protease NS3

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